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Section of spack documentation failed. #846

Open
Rush74 opened this issue Dec 4, 2024 · 5 comments · May be fixed by #910
Open

Section of spack documentation failed. #846

Rush74 opened this issue Dec 4, 2024 · 5 comments · May be fixed by #910

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@Rush74
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Rush74 commented Dec 4, 2024

Description

Hello. I'm completely new to spack and I ran through the documentation here: https://access-hive.org.au/getting_started/spack/#compile-packages

I attempted the Test Spack (OPTIONAL) section. The concretize step failed.

[pag548@gadi-login-04 0.22]$ spack env create test ACCESS-TEST/spack.yaml
==> Created environment test in: /g/data/gb02/pag548/spack/0.22/environments/test
==> Activate with: spack env activate test
[pag548@gadi-login-04 0.22]$ spack env activate -p test
[test] [pag548@gadi-login-04 0.22]$ spack find
==> In environment test
==> 1 root specs
 -  access-test@git.2024.11.15

==> 0 installed packages
[test] [pag548@gadi-login-04 0.22]$ spack concretize -f --fresh
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-t4yf34cuvquqp5xd66zybmcfyhwbdlsf.spec.json
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64/gcc-10.2.1/clingo-bootstrap-spack/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-t4yf34cuvquqp5xd66zybmcfyhwbdlsf.spack
==> Installing "clingo-bootstrap@=spack%gcc@=10.2.1~docs+ipo+optimized+python+static_libstdcpp build_system=cmake build_type=Release generator=make patches=bebb819,ec99431 arch=linux-centos7-x86_64" from a buildcache
==> Warning: The default behavior of tarfile extraction has been changed to disallow common exploits (including CVE-2007-4559). By default, absolute/parent paths are disallowed and some mode bits are cleared. See https://access.redhat.com/articles/7004769 for more details.
==> Error: 2024.11.15 is not a valid git ref for access-test
[test] [pag548@gadi-login-04 0.22]$ spack install
==> Error: 2024.11.15 is not a valid git ref for access-test
[test] [pag548@gadi-login-04 0.22]$ spack find
==> In environment test
==> 1 root specs
 -  access-test@git.2024.11.15

==> 0 installed packages

Why

Chris Bull offered the following:

Looking at your output I think it’s this line that’s the problem:

==> Error: 2024.11.15 is not a valid git ref for access-test

which is probably related to the spec in your spack.yaml file

Close Criteria
@access-hive-bot
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This issue has been mentioned on ACCESS Hive Community Forum. There might be relevant details there:

https://forum.access-hive.org.au/t/creating-a-regional-access-om3/3979/13

@manodeep
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While following the docs for testing spack, I have run into this same issue.

[test] [/g/data/tm70/ms2335/spack/0.22 @gadi08] spack concretize -f --fresh
==> Error: 2024.11.15 is not a valid git ref for access-test

@manodeep
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manodeep commented Dec 18, 2024 •
edited
Loading

For reference, that 2024.11.15 tag does not exist in the ACCESS-TEST git repo, so spack is doing the right thing by failing here. Here is the list of git tags:

[test] [/g/data/tm70/ms2335/spack/0.22/ACCESS-TEST @gadi08] git tag
2024.09.20
2024.09.21
2024.11.0
2024.11.12

edit: the tag does not exist on GitHub either.

Image

@manodeep
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I managed to get the steps to run by changing the tag to 2024.11.12 in two places:

[test] [/g/data/tm70/ms2335/spack/0.22 @gadi06] cd ACCESS-TEST/
[test] [/g/data/tm70/ms2335/spack/0.22/ACCESS-TEST @gadi06] git diff
diff --git a/spack.yaml b/spack.yaml
index c52c5f6..b12ccf8 100644
--- a/spack.yaml
+++ b/spack.yaml
@@ -4,7 +4,7 @@
 # configuration settings.
 spack:
   specs:
-    - access-test@git.2024.11.15
+    - access-test@git.2024.11.12
   packages:
     oasis3-mct:
       require:
@@ -34,5 +34,5 @@ spack:
           - access-test
           - oasis3-mct
         projections:
-          access-test: '{name}/2024.11.15'
+          access-test: '{name}/2024.11.12'
           oasis3-mct: '{name}/2023.11.09-{hash:7}'
[test] [/g/data/tm70/ms2335/spack/0.22/ACCESS-TEST @gadi06]

However, to stay in-sync with the image on the docs page, this tag needs to be the 2024.09.20 (or the image needs to be updated).

Full output log below:

[/g/data/tm70/ms2335/spack/0.22 @gadi06] git clone https://github.com/ACCESS-NRI/ACCESS-TEST.git
Cloning into 'ACCESS-TEST'...
remote: Enumerating objects: 112, done.
remote: Counting objects: 100% (15/15), done.
remote: Compressing objects: 100% (12/12), done.
remote: Total 112 (delta 2), reused 9 (delta 1), pack-reused 97 (from 1)
Receiving objects: 100% (112/112), 36.13 KiB | 2.01 MiB/s, done.
Resolving deltas: 100% (41/41), done.
[/g/data/tm70/ms2335/spack/0.22 @gadi06] emacs -nw ACCESS-TEST/spack.yaml 
[/g/data/tm70/ms2335/spack/0.22 @gadi06] spack env create test ACCESS-TEST/spack.yaml
==> Created environment test in: /g/data/tm70/ms2335/spack/0.22/environments/test
==> Activate with: spack env activate test
[/g/data/tm70/ms2335/spack/0.22 @gadi06] spack env activate -p test
[test] [/g/data/tm70/ms2335/spack/0.22 @gadi06] spack find
==> In environment test
==> 1 root specs
 -  access-test@git.2024.11.12=2024.11.12

==> 0 installed packages
[test] [/g/data/tm70/ms2335/spack/0.22 @gadi06] spack concretize -f --fresh
==> Warning: using "cmake@3.24.2" which is a deprecated version
==> Concretized access-test@git.2024.11.12=2024.11.12
 -   l77rs3g  access-test@git.2024.11.12=2024.11.12%intel@2021.10.0~deterministic build_system=bundle arch=linux-rocky8-x86_64
[e]  5elnsoi      ^glibc@2.28%intel@2021.10.0 build_system=autotools arch=linux-rocky8-x86_64
 -   kok5n7h      ^oasis3-mct@git.2023.11.09=2023.11.09%intel@2021.10.0~deterministic~optimisation_report build_system=makefile arch=linux-rocky8-x86_64
 -   doeoclg          ^gmake@4.4.1%intel@2021.10.0~guile build_system=generic arch=linux-rocky8-x86_64
 -   ntfunrm          ^netcdf-fortran@4.6.1%intel@2021.10.0~doc+pic+shared build_system=autotools arch=linux-rocky8-x86_64
 -   vob7om3              ^netcdf-c@4.9.2%intel@2021.10.0+blosc~byterange~dap~fsync~hdf4~jna+mpi~nczarr_zip+optimize~parallel-netcdf+pic+shared+szip+zstd build_system=autotools patches=0161eb8 arch=linux-rocky8-x86_64
 -   357vng5                  ^bzip2@1.0.8%intel@2021.10.0~debug~pic+shared build_system=generic arch=linux-rocky8-x86_64
 -   y7n7vkn                      ^diffutils@3.10%intel@2021.10.0 build_system=autotools arch=linux-rocky8-x86_64
 -   55ipnye                          ^libiconv@1.17%intel@2021.10.0 build_system=autotools libs=shared,static arch=linux-rocky8-x86_64
 -   zrjfo56                  ^c-blosc@1.21.5%intel@2021.10.0+avx2~ipo build_system=cmake build_type=Release generator=make arch=linux-rocky8-x86_64
[e]  rldyvqn                      ^cmake@3.24.2%intel@2021.10.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rocky8-x86_64
 -   7a5olrr                      ^lz4@1.9.4%intel@2021.10.0+pic build_system=makefile libs=shared,static arch=linux-rocky8-x86_64
 -   wk4pvru                      ^snappy@1.1.10%intel@2021.10.0~ipo+pic+shared build_system=cmake build_type=Release generator=make arch=linux-rocky8-x86_64
 -   aumsrgz                  ^hdf5@1.14.3%intel@2021.10.0~cxx~fortran+hl~ipo~java~map+mpi+shared~subfiling~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make patches=82088c8 arch=linux-rocky8-x86_64
 -   vrupasu                      ^pkgconf@2.2.0%intel@2021.10.0 build_system=autotools arch=linux-rocky8-x86_64
 -   x4hw5jq                  ^libaec@1.0.6%intel@2021.10.0~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rocky8-x86_64
 -   wa2x7rh                  ^zlib-ng@2.1.6%intel@2021.10.0+compat+new_strategies+opt+pic+shared build_system=autotools arch=linux-rocky8-x86_64
 -   kzc7pcv                  ^zstd@1.5.6%intel@2021.10.0~programs build_system=makefile libs=shared,static arch=linux-rocky8-x86_64
[e]  uvea7q2          ^openmpi@4.1.5%intel@2021.10.0 cppflags='-diag-disable=10441' ~atomics~cuda~cxx~cxx_exceptions~gpfs~internal-hwloc~internal-libevent~internal-pmix~java~legacylaunchers~lustre~memchecker~openshmem~orterunprefix~romio+rsh~singularity~static+vt+wrapper-rpath build_system=autotools fabrics=none romio-filesystem=none schedulers=none arch=linux-rocky8-x86_64

[test] [/g/data/tm70/ms2335/spack/0.22 @gadi06] which ^C
[test] [/g/data/tm70/ms2335/spack/0.22 @gadi06] ml spider cmake
ERROR: Unexpected number of args for 'list' command
Try 'module --help' for more information.
[test] [/g/data/tm70/ms2335/spack/0.22 @gadi06] module avail cmake
--------------------------------------------------------------------------------------------------------------------------------------------------------- /apps/Modules/modulefiles ---------------------------------------------------------------------------------------------------------------------------------------------------------
cmake/3.16.2  cmake/3.18.2  cmake/3.21.4  cmake/3.24.2  
[test] [/g/data/tm70/ms2335/spack/0.22 @gadi06] spack install
[+] /usr (external glibc-2.28-5elnsoiqgcg5k5zmmwsp33bmnmaa3g5p)
[+] /apps/cmake/3.24.2 (external cmake-3.24.2-rldyvqnwmmg4cepzstrlmu75vx2wf6cj)
==> openmpi@4.1.5 : has external module in ['openmpi/4.1.5']
[+] /apps/openmpi/4.1.5 (external openmpi-4.1.5-uvea7q2exkjwz2v7azix3x4zfcddnc23)
==> Installing gmake-4.4.1-doeoclgsn63cvh7zfx3trjmyk7rlcqn4 [4/19]
==> No binary for gmake-4.4.1-doeoclgsn63cvh7zfx3trjmyk7rlcqn4 found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/dd/dd16fb1d67bfab79a72f5e8390735c49e3e8e70b4945a15ab1f81ddb78658fb3.tar.gz
==> No patches needed for gmake
==> gmake: Executing phase: 'install'
==> gmake: Successfully installed gmake-4.4.1-doeoclgsn63cvh7zfx3trjmyk7rlcqn4
  Stage: 0.56s.  Install: 1m 55.84s.  Post-install: 0.09s.  Total: 1m 56.70s
[+] /g/data/tm70/ms2335/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/gmake-4.4.1-doeoclgsn63cvh7zfx3trjmyk7rlcqn4
==> Installing lz4-1.9.4-7a5olrrnewy7kmlh5x4bstziuheiqkz4 [5/19]
==> No binary for lz4-1.9.4-7a5olrrnewy7kmlh5x4bstziuheiqkz4 found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/0b/0b0e3aa07c8c063ddf40b082bdf7e37a1562bda40a0ff5272957f3e987e0e54b.tar.gz
==> Ran patch() for lz4
==> lz4: Executing phase: 'edit'
==> lz4: Executing phase: 'build'
==> lz4: Executing phase: 'install'
==> lz4: Successfully installed lz4-1.9.4-7a5olrrnewy7kmlh5x4bstziuheiqkz4
  Stage: 0.37s.  Edit: 0.00s.  Build: 10.03s.  Install: 1.83s.  Post-install: 0.42s.  Total: 12.94s
[+] /g/data/tm70/ms2335/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/lz4-1.9.4-7a5olrrnewy7kmlh5x4bstziuheiqkz4
==> Installing libaec-1.0.6-x4hw5jqq3zvnrgjicgweicomeaelulqq [6/19]
==> No binary for libaec-1.0.6-x4hw5jqq3zvnrgjicgweicomeaelulqq found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/ab/abab8c237d85c982bb4d6bde9b03c1f3d611dcacbd58bca55afac2496d61d4be.tar.gz
==> No patches needed for libaec
==> libaec: Executing phase: 'cmake'
==> libaec: Executing phase: 'build'
==> libaec: Executing phase: 'install'
==> libaec: Successfully installed libaec-1.0.6-x4hw5jqq3zvnrgjicgweicomeaelulqq
  Stage: 1.36s.  Cmake: 15.75s.  Build: 4.38s.  Install: 0.58s.  Post-install: 0.19s.  Total: 22.92s
[+] /g/data/tm70/ms2335/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/libaec-1.0.6-x4hw5jqq3zvnrgjicgweicomeaelulqq
==> Installing zlib-ng-2.1.6-wa2x7rho3km6qpiki56dpjlpsce4c5n6 [7/19]
==> No binary for zlib-ng-2.1.6-wa2x7rho3km6qpiki56dpjlpsce4c5n6 found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/a5/a5d504c0d52e2e2721e7e7d86988dec2e290d723ced2307145dedd06aeb6fef2.tar.gz
==> No patches needed for zlib-ng
==> zlib-ng: Executing phase: 'autoreconf'
==> zlib-ng: Executing phase: 'configure'
==> zlib-ng: Executing phase: 'build'
==> zlib-ng: Executing phase: 'install'
==> zlib-ng: Successfully installed zlib-ng-2.1.6-wa2x7rho3km6qpiki56dpjlpsce4c5n6
  Stage: 2.39s.  Autoreconf: 0.00s.  Configure: 28.30s.  Build: 6.16s.  Install: 1.77s.  Post-install: 0.14s.  Total: 39.76s
[+] /g/data/tm70/ms2335/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/zlib-ng-2.1.6-wa2x7rho3km6qpiki56dpjlpsce4c5n6
==> Installing snappy-1.1.10-wk4pvrufyvy7v3hxn5nwa3i3fncp3azm [8/19]
==> No binary for snappy-1.1.10-wk4pvrufyvy7v3hxn5nwa3i3fncp3azm found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/49/49d831bffcc5f3d01482340fe5af59852ca2fe76c3e05df0e67203ebbe0f1d90.tar.gz
==> No patches needed for snappy
==> snappy: Executing phase: 'cmake'
==> snappy: Executing phase: 'build'
==> snappy: Executing phase: 'install'
==> snappy: Successfully installed snappy-1.1.10-wk4pvrufyvy7v3hxn5nwa3i3fncp3azm
  Stage: 0.25s.  Cmake: 38.53s.  Build: 3.34s.  Install: 0.27s.  Post-install: 0.15s.  Total: 42.85s
[+] /g/data/tm70/ms2335/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/snappy-1.1.10-wk4pvrufyvy7v3hxn5nwa3i3fncp3azm
==> Installing zstd-1.5.6-kzc7pcve7csxlonb2uaxzgyyuqfx6cz4 [9/19]
==> No binary for zstd-1.5.6-kzc7pcve7csxlonb2uaxzgyyuqfx6cz4 found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/30/30f35f71c1203369dc979ecde0400ffea93c27391bfd2ac5a9715d2173d92ff7.tar.gz
==> No patches needed for zstd
==> zstd: Executing phase: 'edit'
==> zstd: Executing phase: 'build'
==> zstd: Executing phase: 'install'
==> zstd: Successfully installed zstd-1.5.6-kzc7pcve7csxlonb2uaxzgyyuqfx6cz4
  Stage: 1.70s.  Edit: 0.00s.  Build: 0.00s.  Install: 26.51s.  Post-install: 0.15s.  Total: 29.27s
[+] /g/data/tm70/ms2335/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/zstd-1.5.6-kzc7pcve7csxlonb2uaxzgyyuqfx6cz4
==> Installing libiconv-1.17-55ipnyeeqcpbfgaqfanu36viaqqni3sx [10/19]
==> No binary for libiconv-1.17-55ipnyeeqcpbfgaqfanu36viaqqni3sx found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/8f/8f74213b56238c85a50a5329f77e06198771e70dd9a739779f4c02f65d971313.tar.gz
==> No patches needed for libiconv
==> libiconv: Executing phase: 'autoreconf'
==> libiconv: Executing phase: 'configure'
==> libiconv: Executing phase: 'build'
==> libiconv: Executing phase: 'install'
==> libiconv: Successfully installed libiconv-1.17-55ipnyeeqcpbfgaqfanu36viaqqni3sx
  Stage: 3.22s.  Autoreconf: 0.00s.  Configure: 2m 14.15s.  Build: 45.71s.  Install: 5.26s.  Post-install: 0.60s.  Total: 3m 9.96s
[+] /g/data/tm70/ms2335/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/libiconv-1.17-55ipnyeeqcpbfgaqfanu36viaqqni3sx
==> Installing pkgconf-2.2.0-vrupasu7smpgcbarzpdwap45fcvjbjoa [11/19]
==> No binary for pkgconf-2.2.0-vrupasu7smpgcbarzpdwap45fcvjbjoa found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/b0/b06ff63a83536aa8c2f6422fa80ad45e4833f590266feb14eaddfe1d4c853c69.tar.xz
==> No patches needed for pkgconf
==> pkgconf: Executing phase: 'autoreconf'
==> pkgconf: Executing phase: 'configure'
==> pkgconf: Executing phase: 'build'
==> pkgconf: Executing phase: 'install'
==> pkgconf: Successfully installed pkgconf-2.2.0-vrupasu7smpgcbarzpdwap45fcvjbjoa
  Stage: 0.76s.  Autoreconf: 0.00s.  Configure: 27.79s.  Build: 4.67s.  Install: 0.72s.  Post-install: 0.18s.  Total: 34.65s
[+] /g/data/tm70/ms2335/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/pkgconf-2.2.0-vrupasu7smpgcbarzpdwap45fcvjbjoa
==> Installing c-blosc-1.21.5-zrjfo567d2n6ctwayae77z3b54mf23yc [12/19]
==> No binary for c-blosc-1.21.5-zrjfo567d2n6ctwayae77z3b54mf23yc found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/32/32e61961bbf81ffea6ff30e9d70fca36c86178afd3e3cfa13376adec8c687509.tar.gz
==> No patches needed for c-blosc
==> c-blosc: Executing phase: 'cmake'
==> c-blosc: Executing phase: 'build'
==> c-blosc: Executing phase: 'install'
==> c-blosc: Successfully installed c-blosc-1.21.5-zrjfo567d2n6ctwayae77z3b54mf23yc
  Stage: 1.10s.  Cmake: 8.68s.  Build: 3.47s.  Install: 0.58s.  Post-install: 0.18s.  Total: 16.50s
[+] /g/data/tm70/ms2335/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/c-blosc-1.21.5-zrjfo567d2n6ctwayae77z3b54mf23yc
==> Installing diffutils-3.10-y7n7vkngczu47neysm3retisvlsmw53l [13/19]
==> No binary for diffutils-3.10-y7n7vkngczu47neysm3retisvlsmw53l found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/90/90e5e93cc724e4ebe12ede80df1634063c7a855692685919bfe60b556c9bd09e.tar.xz
==> No patches needed for diffutils
==> diffutils: Executing phase: 'autoreconf'
==> diffutils: Executing phase: 'configure'
==> diffutils: Executing phase: 'build'
==> diffutils: Executing phase: 'install'
==> diffutils: Successfully installed diffutils-3.10-y7n7vkngczu47neysm3retisvlsmw53l
  Stage: 2.61s.  Autoreconf: 0.00s.  Configure: 4m 10.83s.  Build: 10.77s.  Install: 3.84s.  Post-install: 0.54s.  Total: 4m 29.00s
[+] /g/data/tm70/ms2335/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/diffutils-3.10-y7n7vkngczu47neysm3retisvlsmw53l
==> Installing hdf5-1.14.3-aumsrgzvbh6grtyyegzuufilnqa7ftm7 [14/19]
==> No binary for hdf5-1.14.3-aumsrgzvbh6grtyyegzuufilnqa7ftm7 found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/09/09cdb287aa7a89148c1638dd20891fdbae08102cf433ef128fd345338aa237c7.tar.gz
==> Applied patch /g/data/tm70/ms2335/spack/0.22/spack/var/spack/repos/builtin/packages/hdf5/hdf5_1_14_3_fpe.patch
==> Ran patch() for hdf5
==> hdf5: Executing phase: 'cmake'
==> hdf5: Executing phase: 'build'
==> hdf5: Executing phase: 'install'
==> hdf5: Successfully installed hdf5-1.14.3-aumsrgzvbh6grtyyegzuufilnqa7ftm7
  Stage: 5.31s.  Cmake: 3m 55.24s.  Build: 1m 6.85s.  Install: 16.16s.  Post-install: 4.73s.  Total: 5m 29.98s
[+] /g/data/tm70/ms2335/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/hdf5-1.14.3-aumsrgzvbh6grtyyegzuufilnqa7ftm7
==> Installing bzip2-1.0.8-357vng5dpd7w7s7lletycxccjbl45ngt [15/19]
==> No binary for bzip2-1.0.8-357vng5dpd7w7s7lletycxccjbl45ngt found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/ab/ab5a03176ee106d3f0fa90e381da478ddae405918153cca248e682cd0c4a2269.tar.gz
==> Ran patch() for bzip2
==> bzip2: Executing phase: 'install'
==> bzip2: Successfully installed bzip2-1.0.8-357vng5dpd7w7s7lletycxccjbl45ngt
  Stage: 0.98s.  Install: 7.39s.  Post-install: 0.14s.  Total: 8.79s
[+] /g/data/tm70/ms2335/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/bzip2-1.0.8-357vng5dpd7w7s7lletycxccjbl45ngt
==> Installing netcdf-c-4.9.2-vob7om32jopqwss5jilrdtqqogjvcmzb [16/19]
==> No binary for netcdf-c-4.9.2-vob7om32jopqwss5jilrdtqqogjvcmzb found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/bc/bc104d101278c68b303359b3dc4192f81592ae8640f1aee486921138f7f88cb7.tar.gz
==> Fetching https://mirror.spack.io/_source-cache/archive/01/0161eb870fdfaf61be9d70132c9447a537320342366362e76b8460c823bf95ca
==> Applied patch https://github.com/Unidata/netcdf-c/commit/f8904d5a1d89420dde0f9d2c0e051ba08d08e086.patch?full_index=1
==> netcdf-c: Executing phase: 'autoreconf'
==> netcdf-c: Executing phase: 'configure'
==> netcdf-c: Executing phase: 'build'
==> netcdf-c: Executing phase: 'install'
==> netcdf-c: Successfully installed netcdf-c-4.9.2-vob7om32jopqwss5jilrdtqqogjvcmzb
  Stage: 3.96s.  Autoreconf: 0.01s.  Configure: 2m 38.35s.  Build: 55.17s.  Install: 6.08s.  Post-install: 0.38s.  Total: 3m 45.06s
[+] /g/data/tm70/ms2335/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/netcdf-c-4.9.2-vob7om32jopqwss5jilrdtqqogjvcmzb
==> Installing netcdf-fortran-4.6.1-ntfunrmysxanqqu7sqfmf66zdkd2xemy [17/19]
==> No binary for netcdf-fortran-4.6.1-ntfunrmysxanqqu7sqfmf66zdkd2xemy found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/b5/b50b0c72b8b16b140201a020936aa8aeda5c79cf265c55160986cd637807a37a.tar.gz
==> No patches needed for netcdf-fortran
==> netcdf-fortran: Executing phase: 'autoreconf'
==> netcdf-fortran: Executing phase: 'configure'
==> netcdf-fortran: Executing phase: 'build'
==> netcdf-fortran: Executing phase: 'install'
==> netcdf-fortran: Successfully installed netcdf-fortran-4.6.1-ntfunrmysxanqqu7sqfmf66zdkd2xemy
  Stage: 0.84s.  Autoreconf: 0.00s.  Configure: 1m 45.21s.  Build: 27.47s.  Install: 1.43s.  Post-install: 0.30s.  Total: 2m 16.54s
[+] /g/data/tm70/ms2335/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/netcdf-fortran-4.6.1-ntfunrmysxanqqu7sqfmf66zdkd2xemy
==> Installing oasis3-mct-git.2023.11.09=2023.11.09-kok5n7hvm374eicnidcedxhgxmmytc2p [18/19]
==> No binary for oasis3-mct-git.2023.11.09=2023.11.09-kok5n7hvm374eicnidcedxhgxmmytc2p found: installing from source
==> No patches needed for oasis3-mct
==> oasis3-mct: Executing phase: 'edit'
==> oasis3-mct: Executing phase: 'build'
==> oasis3-mct: Executing phase: 'install'
==> oasis3-mct: Successfully installed oasis3-mct-git.2023.11.09=2023.11.09-kok5n7hvm374eicnidcedxhgxmmytc2p
  Stage: 2.80s.  Edit: 0.02s.  Build: 3m 33.86s.  Install: 1.37s.  Post-install: 1.95s.  Total: 3m 40.87s
[+] /g/data/tm70/ms2335/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/oasis3-mct-git.2023.11.09_2023.11.09-kok5n7hvm374eicnidcedxhgxmmytc2p
==> Installing access-test-git.2024.11.12=2024.11.12-l77rs3g4ibe7vehktxvhrmvzanjumfok [19/19]
==> No binary for access-test-git.2024.11.12=2024.11.12-l77rs3g4ibe7vehktxvhrmvzanjumfok found: installing from source
==> No patches needed for access-test
==> access-test: Executing phase: 'install'
==> access-test: Successfully installed access-test-git.2024.11.12=2024.11.12-l77rs3g4ibe7vehktxvhrmvzanjumfok
  Stage: 0.00s.  Install: 0.00s.  Post-install: 0.48s.  Total: 1.27s
[+] /g/data/tm70/ms2335/spack/0.22/release/linux-rocky8-x86_64/intel-2021.10.0/access-test-git.2024.11.12_2024.11.12-l77rs3g4ibe7vehktxvhrmvzanjumfok
==> Updating view at /g/data/tm70/ms2335/spack/0.22/environments/test/.spack-env/view

@manodeep manodeep mentioned this issue Dec 19, 2024
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@atteggiani atteggiani assigned atteggiani and unassigned atteggiani Jan 22, 2025
@atteggiani
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atteggiani commented Mar 5, 2025 •
edited
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Hello @Rush74 and everyone,

thank you for raising this issue and apologies for my late response.

Indeed this is a bug and needs to be fixed.

However, the bug is in the ACCESS-TEST environment (spack.yaml).
I raised this issue in the related ACCESS-TEST repo, because the repo has been modified and the documentation is not valid anymore.

Thank you for pointing this out!

@atteggiani atteggiani mentioned this issue Mar 5, 2025
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@atteggiani atteggiani linked a pull request Apr 2, 2025 that will close this issue
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@manodeep @Rush74 @atteggiani @access-hive-bot