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Issues list

Standalone Spark cluster thread is not started bug spark/adam
#183 opened Mar 15, 2016 by almussel
@almussel
1
Reproducible storage for indices/large reference files discuss enhancement
#85 opened Jan 15, 2016 by fnothaft
Don't hard code us-west-2 in dbSNP URL enhancement spark/adam
#109 opened Feb 23, 2016 by fnothaft
@hannes-ucsc
2
Allow ADAM überscript to take .aws/credentials file enhancement spark/adam
#115 opened Feb 24, 2016 by fnothaft
1
Automatically detect worker instance type when autoscaling enhancement spark/adam
#122 opened Feb 29, 2016 by fnothaft
Migrate away from using multiprocessing library to identify core count enhancement
#125 opened Feb 29, 2016 by fnothaft
4
Spark/HDFS leader can die, causing our cluster to discover the true depths of sadness enhancement spark/adam
#126 opened Mar 1, 2016 by fnothaft
3
adam-uberscript: batch calls to grow_cluster enhancement spark/adam
#128 opened Mar 2, 2016 by hannes-ucsc
ADAM Recompute spark/adam task
#130 opened Mar 2, 2016 by fnothaft
2 of 8 tasks
@fnothaft
7
Use Boto for reference file download in gatk_germline, gatk_preprocessing as well enhancement need info spark/adam
#143 opened Mar 4, 2016 by fnothaft
@jpdna
5
Concordance scripts for ADAM/GATK pipeline enhancement need info spark/adam
#167 opened Mar 11, 2016 by fnothaft
2 tasks
@heuermh
3
Test auto-scaling of stand-alone Spark cluster spark/adam task
#180 opened Mar 15, 2016 by hannes-ucsc
@almussel
Add a container for the MuSe variant caller enhancement ready
#36 opened Oct 25, 2015 by melissacline
@Jeltje
6
Use cgcloud to terminate instances in adam_überscript enhancement spark/adam
#182 opened Mar 15, 2016 by fnothaft
@hannes-ucsc
3
multiprocessing called from toil leader in gatk_{germline,processing} bug planned
#186 opened Mar 16, 2016 by fnothaft
@jpfeil
5
Update upload/download SOP for clients enhancement
#217 opened Mar 30, 2016 by briandoconnor
@hannes-ucsc
3
Register RNASeq-CGL to Dockstore planned
#272 opened May 17, 2016 by briandoconnor
@briandoconnor @nsjake
1
Update the spreadsheet and workflow status
#278 opened May 18, 2016 by jvivian
@briandoconnor
Make a deFuse pipeline
#281 opened May 22, 2016 by jpfeil
Collect resource usage stats during docker call
#293 opened Jun 7, 2016 by jpfeil
Speed up _download_s3_url enhancement
#306 opened Jun 15, 2016 by hannes-ucsc
Attach Apache 2 license header to all source files ready
#309 opened Jun 19, 2016 by fnothaft
@fnothaft
Remove author tags from scripts
#310 opened Jun 20, 2016 by fnothaft
@fnothaft
Print errors to STDERR
#319 opened Jun 24, 2016 by Jeltje
2
Fix importFile documentation
#480 opened Feb 18, 2017 by cket
@cket
ProTip! What’s not been updated in a month: updated:<2025-02-28.