Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

WoRMS Orthonectida misses genera #979

Open
mdoering opened this issue Mar 14, 2025 · 4 comments
Open

WoRMS Orthonectida misses genera #979

mdoering opened this issue Mar 14, 2025 · 4 comments
Assignees
Labels
feedback User feedback

Comments

@mdoering
Copy link
Member

When hunting down the reason why COL has lost nearly all species of the WoRMS sector Orthonectida
it turns out the subject phylum Orthonectida is wrongly matched to the genus with id x6, which is an import artifcat because the genus is missing in the WoRMS exports, see invalid parent id here:
https://www.checklistbank.org/dataset/1149/taxon/urn%3Alsid%3Amarinespecies.org%3Ataxname%3A265733

This causes the importer to create an implicit genus. It happens for 5 genera in this dataset:
https://www.checklistbank.org/dataset/1149/names?facet=rank&facet=issue&facet=status&facet=nomStatus&facet=nomCode&facet=nameType&facet=field&facet=authorship&facet=authorshipYear&facet=extinct&facet=environment&facet=origin&facet=sectorMode&facet=secondarySourceGroup&facet=sectorDatasetKey&facet=group&limit=50&offset=0&origin=denormed%20classification&sortBy=taxonomic

There are 25 names with an invalid parentID:
https://www.checklistbank.org/dataset/1149/issues

@mdoering mdoering added the feedback User feedback label Mar 14, 2025
@mdoering
Copy link
Member Author

@bart-v can we do another export and do you have an idea why that happened?

@bart-v
Copy link

bart-v commented Mar 14, 2025

The missing parents are caused by a setting where we only export verified/checked records, also for the parents.
The parents part does not make too much sense: we have changed this now.

I have generated a new export: is this any better?

@mdoering
Copy link
Member Author

yes thanks! Just one invalid parent record left which is for the root phylum Orthonectida itself:
https://www.checklistbank.org/dataset/1149/issues

@bart-v
Copy link

bart-v commented Mar 17, 2025

Indeed.
Will be fixed on next export 2025-04-01

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
feedback User feedback
Projects
None yet
Development

No branches or pull requests

3 participants