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ISA-tools/stato
<Literal xml:lang="nih.gov) in annotation about a collaborator

Literal xml:lang= nih.gov) Kenneth Wilkins (kenneth.wilkins /Literal
  • proccaserra
  • Opened 
    on Jul 19, 2024
  • #96

ISA-tools/stato
Serialize STATO in RDF/XML rather then OWL/XML to allow loading in EMBL-EBI Ontology Lookup Service

Related to: - https://github.com/HUPO-PSI/psi-ms-CV/issues/292 - Enable loading of STATO
enhancement
  • proccaserra
  • Opened 
    on Jul 13, 2024
  • #95

ISA-tools/stato
F1 score term addition to the STATO ontology

Hi, I believe the F1 Score has a very statistical significance and should be classified with the likes of accuracy, precision especially when dealing with machine learning. The F1 score is the harmonic ...
enhancement
  • Zainab-ik
  • 3
  • Opened 
    on Mar 20, 2024
  • #93

ISA-tools/stato
Unsatisfiable classes in STATO

I stumbled across the following unsatisfiable classes in STATO in encountering them in the MS ontology: image Here is the explanation for STATO_0000046 being unsatisfiable: image What had me perplexed ...
  • henrietteharmse
  • 2
  • Opened 
    on Feb 27, 2024
  • #90

ISA-tools/stato
Stato does not conform to OWL-DL profile

robot validate-profile -p DL -i download/stato.owl OWL 2 DL Profile Report: Ontology and imports closure NOT in profile. The following violations are present: Use of reserved vocabulary for annotation ...
bug
  • cmungall
  • 3
  • Opened 
    on Jan 10, 2024
  • #88

ISA-tools/stato
Definition of mortality

Hi, we are looking at mortality after trauma surgery. While we do, in general, greatly appreciate the STATO representation of mortality, there is one aspect that makes us concerned about reusing the class: ...
  • mbrochhausen
  • 2
  • Opened 
    on Mar 28, 2023
  • #87

ISA-tools/stato
Suggestion for formalizing F beta score

Hi stato peeps, We are trying to record confidence F scores for markers of cells in our ontology (PCL/BDSO) and was wondering if you had any suggestions on standard ways to annotate that statistic. Below ...
  • shawntanzk
  • 6
  • Opened 
    on Feb 17, 2022
  • #85

ISA-tools/stato
statistical model should be a child of 'information content entity' rather than 'data item'

as discussed on 09.06.2021
  • proccaserra
  • Opened 
    on Jun 9, 2021
  • #84

ISA-tools/stato
Add obofoundry topic to repo metadata

The OBO Foundry has recently created a topics page at https://github.com/topics/obofoundry. It would be great if you could add the obofoundry topic to your repository, since it s currently listed as active ...
enhancement
  • cthoyt
  • 2
  • Opened 
    on Jun 8, 2021
  • #83

ISA-tools/stato
annotating a data science workflow with STATO

Hello, Thanks for creating a great resource! I am wondering whether STATO could be used to annotate data science workflows including a set of data objects and their transformations. To take a simple case, ...
  • realmarcin
  • 1
  • Opened 
    on Oct 26, 2020
  • #82
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