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SpackInstall.html
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<div class="title">Installation using Spack </div> </div>
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<div class="textblock"><p><a href="https://spack.io">Spack</a> is a python-based package manager that can install all dependencies.</p>
<p><a class="el" href="namespace_m_a_s_t.html">MAST</a> is installed from source.</p>
<ol type="1">
<li>Install Spack using instructions <div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> $ git clone https://github.com/spack/spack.git</div><div class="line"><a name="l00002"></a><span class="lineno"> 2</span> $ . spack/share/spack/setup-env.sh</div></div><!-- fragment --></li>
<li>Install <a class="el" href="namespace_m_a_s_t.html">MAST</a> and all dependencies <div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> $ spack install \</div><div class="line"><a name="l00002"></a><span class="lineno"> 2</span>  libmesh +exodusii+hdf5+metis+boost+eigen+slepc \</div><div class="line"><a name="l00003"></a><span class="lineno"> 3</span>  ^eigen ~fftw~metis~mpfr \</div><div class="line"><a name="l00004"></a><span class="lineno"> 4</span>  ^petsc ~complex~debug+double+hdf5+hypre~int64+metis+mpi+mumps+shared+suite-sparse+superlu-dist+trilinos \</div><div class="line"><a name="l00005"></a><span class="lineno"> 5</span>  ^intel-mkl %gcc@8.2.0</div></div><!-- fragment --></li>
<li>Create symbolic link to all packages on in a directory for <a class="el" href="namespace_m_a_s_t.html">MAST</a> installation. Replace <code>{SPACK_CODES}</code> with the directory where you want these links created. <div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> $ spack view -v -d true symlink {SPACK_CODES} \</div><div class="line"><a name="l00002"></a><span class="lineno"> 2</span>  libmesh +exodusii+hdf5+metis+boost+eigen+slepc \</div><div class="line"><a name="l00003"></a><span class="lineno"> 3</span>  ^eigen ~fftw~metis~mpfr \</div><div class="line"><a name="l00004"></a><span class="lineno"> 4</span>  ^petsc ~complex~debug+double+hdf5+hypre~int64+metis+mpi+mumps+shared+suite-sparse+superlu-dist+trilinos \</div><div class="line"><a name="l00005"></a><span class="lineno"> 5</span>  ^intel-mkl %gcc@8.2.0</div></div><!-- fragment --></li>
<li>Download <a class="el" href="namespace_m_a_s_t.html">MAST</a> in directory where it will be built. The directory is called <code>{CODES}</code> in the following and should be replaced. <div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> $ cd {CODES}</div><div class="line"><a name="l00002"></a><span class="lineno"> 2</span> $ mkdir mast</div><div class="line"><a name="l00003"></a><span class="lineno"> 3</span> $ cd mast</div><div class="line"><a name="l00004"></a><span class="lineno"> 4</span> $ git clone https://github.com/MASTmultiphysics/mast-multiphysics.git</div></div><!-- fragment --></li>
<li>Configure <a class="el" href="namespace_m_a_s_t.html">MAST</a> <div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> $ mkdir dbg</div><div class="line"><a name="l00002"></a><span class="lineno"> 2</span> $ cd dbg</div><div class="line"><a name="l00003"></a><span class="lineno"> 3</span> $ export SPACK_VIEW_DIR={SPACK_CODES} \</div><div class="line"><a name="l00004"></a><span class="lineno"> 4</span>  cmake ../mast-multiphysics \</div><div class="line"><a name="l00005"></a><span class="lineno"> 5</span>  -DMPI_C_COMPILER=${SPACK_VIEW_DIR}/bin/mpicc \</div><div class="line"><a name="l00006"></a><span class="lineno"> 6</span>  -DMPI_CXX_COMPILER=${SPACK_VIEW_DIR}/bin/mpicxx \</div><div class="line"><a name="l00007"></a><span class="lineno"> 7</span>  -DCMAKE_C_COMPILER=${SPACK_VIEW_DIR}/bin/mpicc \</div><div class="line"><a name="l00008"></a><span class="lineno"> 8</span>  -DCMAKE_CXX_COMPILER=${SPACK_VIEW_DIR}/bin/mpicxx \</div><div class="line"><a name="l00009"></a><span class="lineno"> 9</span>  -DCMAKE_Fortran_COMPILER=${SPACK_VIEW_DIR}/bin/mpif90 \</div><div class="line"><a name="l00010"></a><span class="lineno"> 10</span>  -DlibMesh_DIR=${SPACK_VIEW_DIR} \</div><div class="line"><a name="l00011"></a><span class="lineno"> 11</span>  -DPETSc_DIR=${SPACK_VIEW_DIR} \</div><div class="line"><a name="l00012"></a><span class="lineno"> 12</span>  -DSLEPc_DIR=${SPACK_VIEW_DIR} \</div><div class="line"><a name="l00013"></a><span class="lineno"> 13</span>  -DBOOST_ROOT=${SPACK_VIEW_DIR}/include \</div><div class="line"><a name="l00014"></a><span class="lineno"> 14</span>  -DCMAKE_BUILD_TYPE=Debug</div></div><!-- fragment --></li>
<li>Build <a class="el" href="namespace_m_a_s_t.html">MAST</a>: <div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> $ make -j N</div></div><!-- fragment --> Replace N with the number of cores on your machine to enable parallel build.</li>
<li>Test <a class="el" href="namespace_m_a_s_t.html">MAST</a> by running example_2: <div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> $ ./examples/structural/example_1/structural_example_1 -ksp_type preonly -pc_type lu</div></div><!-- fragment --> </li>
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