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trying to run mza over timsTOF-pro DDA but facing following memory allocation issues
Z:\Download\mza_v1.25.02.19>mza.exe -f c:\Users\animeshs\IDH1\220202_Sigrid_28b_Slot2-28_1_905.d
Processing file: c:\Users\animeshs\IDH1\220202_Sigrid_28b_Slot2-28_1_905.d
Process Process-7:
Traceback (most recent call last):
File "multiprocessing\process.py", line 297, in _bootstrap
File "multiprocessing\process.py", line 99, in run
File "source\BrukerTimsTof2mza.py", line 37, in parse_partition
File "pyTDFSDK\classes.py", line 102, in __init__
File "pyTDFSDK\classes.py", line 125, in get_db_tables
File "pyTDFSDK\classes.py", line 125, in <dictcomp>
File "pandas\io\sql.py", line 443, in read_sql_query
File "pandas\io\sql.py", line 2139, in read_query
File "pandas\io\sql.py", line 172, in _wrap_result
File "pandas\core\frame.py", line 2073, in from_records
File "pandas\core\internals\construction.py", line 797, in to_arrays
File "pandas\core\internals\construction.py", line 815, in _list_to_arrays
File "pandas\_libs\lib.pyx", line 2955, in pandas._libs.lib.to_object_array_tuples
MemoryError
Process Process-5:
Traceback (most recent call last):
File "multiprocessing\process.py", line 297, in _bootstrap
File "multiprocessing\process.py", line 99, in run
File "source\BrukerTimsTof2mza.py", line 37, in parse_partition
File "pyTDFSDK\classes.py", line 102, in __init__
File "pyTDFSDK\classes.py", line 125, in get_db_tables
File "pyTDFSDK\classes.py", line 125, in <dictcomp>
File "pandas\io\sql.py", line 443, in read_sql_query
File "pandas\io\sql.py", line 2139, in read_query
File "pandas\io\sql.py", line 172, in _wrap_result
File "pandas\core\frame.py", line 2073, in from_records
File "pandas\core\internals\construction.py", line 807, in to_arrays
File "pandas\core\internals\construction.py", line 912, in _finalize_columns_and_data
File "pandas\core\internals\construction.py", line 997, in _convert_object_array
File "pandas\core\internals\construction.py", line 997, in <listcomp>
File "pandas\core\internals\construction.py", line 993, in convert
File "pandas\_libs\lib.pyx", line 2449, in pandas._libs.lib.maybe_convert_objects
numpy.core._exceptions._ArrayMemoryError: Unable to allocate 184. MiB for an array with shape (24083136,) and data type uint64
Process Process-11:
Traceback (most recent call last):
File "multiprocessing\process.py", line 297, in _bootstrap
File "multiprocessing\process.py", line 99, in run
File "source\BrukerTimsTof2mza.py", line 37, in parse_partition
File "pyTDFSDK\classes.py", line 102, in __init__
File "pyTDFSDK\classes.py", line 125, in get_db_tables
File "pyTDFSDK\classes.py", line 125, in <dictcomp>
File "pandas\io\sql.py", line 443, in read_sql_query
File "pandas\io\sql.py", line 2139, in read_query
File "pandas\io\sql.py", line 172, in _wrap_result
File "pandas\core\frame.py", line 2073, in from_records
File "pandas\core\internals\construction.py", line 807, in to_arrays
File "pandas\core\internals\construction.py", line 912, in _finalize_columns_and_data
File "pandas\core\internals\construction.py", line 997, in _convert_object_array
File "pandas\core\internals\construction.py", line 997, in <listcomp>
File "pandas\core\internals\construction.py", line 993, in convert
File "pandas\_libs\lib.pyx", line 2448, in pandas._libs.lib.maybe_convert_objects
numpy.core._exceptions._ArrayMemoryError: Unable to allocate 184. MiB for an array with shape (24083136,) and data type int64
Process Process-14:
Traceback (most recent call last):
File "multiprocessing\process.py", line 297, in _bootstrap
File "multiprocessing\process.py", line 99, in run
File "source\BrukerTimsTof2mza.py", line 37, in parse_partition
File "pyTDFSDK\classes.py", line 102, in __init__
File "pyTDFSDK\classes.py", line 125, in get_db_tables
File "pyTDFSDK\classes.py", line 125, in <dictcomp>
File "pandas\io\sql.py", line 443, in read_sql_query
File "pandas\io\sql.py", line 2139, in read_query
File "pandas\io\sql.py", line 172, in _wrap_result
File "pandas\core\frame.py", line 2073, in from_records
File "pandas\core\internals\construction.py", line 807, in to_arrays
File "pandas\core\internals\construction.py", line 912, in _finalize_columns_and_data
File "pandas\core\internals\construction.py", line 997, in _convert_object_array
File "pandas\core\internals\construction.py", line 997, in <listcomp>
File "pandas\core\internals\construction.py", line 993, in convert
File "pandas\_libs\lib.pyx", line 2447, in pandas._libs.lib.maybe_convert_objects
numpy.core._exceptions._ArrayMemoryError: Unable to allocate 367. MiB for an array with shape (24083136,) and data type complex128
...
following machine specs
C:\Windows\System32>systeminfo
Host Name: DMED7596
OS Name: Microsoft Windows 11 Education
OS Version: 10.0.22635 N/A Build 22635
OS Manufacturer: Microsoft Corporation
OS Configuration: Member Workstation
OS Build Type: Multiprocessor Free
Registered Owner: N/A
Registered Organization: N/A
Product ID: 00328-10000-00001-AA719
Original Install Date: 02-Dec-23, 08:57:01 AM
System Boot Time: 27-Feb-25, 10:35:13 AM
System Manufacturer: Dell Inc.
System Model: Precision Tower 7910
System Type: x64-based PC
Processor(s): 2 Processor(s) Installed.
[01]: Intel64 Family 6 Model 63 Stepping 2 GenuineIntel ~3401 Mhz
[02]: Intel64 Family 6 Model 63 Stepping 2 GenuineIntel ~3401 Mhz
BIOS Version: Dell Inc. A10, 08-Jan-16
Windows Directory: C:\WINDOWS
System Directory: C:\WINDOWS\system32
Boot Device: \Device\HarddiskVolume8
System Locale: en-us;English (United States)
Input Locale: no;Norwegian (Bokmal)
Time Zone: (UTC+01:00) Amsterdam, Berlin, Bern, Rome, Stockholm, Vienna
Total Physical Memory: 130,994 MB
Available Physical Memory: 51,816 MB
Virtual Memory: Max Size: 130,994 MB
Virtual Memory: Available: 19,292 MB
Virtual Memory: In Use: 111,702 MB
Page File Location(s): N/A
Domain: win.ntnu.no
Logon Server: \\WIN-DC2
Hotfix(s): 4 Hotfix(s) Installed.
[01]: KB5037591
[02]: KB5031483
[03]: KB5032283
[04]: KB5032282
Network Card(s): 2 NIC(s) Installed.
[01]: Intel(R) I210 Gigabit Network Connection
Connection Name: Ethernet 2
Status: Media disconnected
[02]: Intel(R) Ethernet Connection I217-LM
Connection Name: Ethernet 3
DHCP Enabled: Yes
DHCP Server: 129.241.0.205
IP address(es)
[01]: 10.20.93.229
[02]: fe80::dbd5:6548:a80f:aa5d
Hyper-V Requirements: A hypervisor has been detected. Features required for Hyper-V will not be displayed.
C:\Windows\System32>
any way to circumvent this?
The text was updated successfully, but these errors were encountered:
trying to run mza over timsTOF-pro DDA but facing following memory allocation issues
following machine specs
any way to circumvent this?
The text was updated successfully, but these errors were encountered: