Files

 master

/

docs

/

Copy path

Directory actions

More options

Directory actions

More options

Latest commit

cimendes

update container version

May 11, 2020

66cef25 · May 11, 2020

History

History

/

docs

/

Top

Folders and files

Name		Name	Last commit message	Last commit date
parent directory ..
_static		_static	Changed docs class	Sep 21, 2018
about		about	Added about to documentation	Jun 12, 2018
dev		dev	fix typo	Jun 11, 2019
getting_started		getting_started	remove submodule from dev install	Jun 11, 2019
resources		resources	Add Kraken2 component (#185)	Jan 2, 2019
user		user	update container version	May 11, 2020
Makefile		Makefile	Added automatic doc building	Feb 5, 2018
conf.py		conf.py	Fixed non-ascii character in docs config	Jun 12, 2018
flowcraft.flowcraft.rst		flowcraft.flowcraft.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.generator.components.annotation.rst		flowcraft.generator.components.annotation.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.generator.components.assembly.rst		flowcraft.generator.components.assembly.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.generator.components.assembly_processing.rst		flowcraft.generator.components.assembly_processing.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.generator.components.distance_estimation.rst		flowcraft.generator.components.distance_estimation.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.generator.components.downloads.rst		flowcraft.generator.components.downloads.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.generator.components.metagenomics.rst		flowcraft.generator.components.metagenomics.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.generator.components.mlst.rst		flowcraft.generator.components.mlst.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.generator.components.patlas_mapping.rst		flowcraft.generator.components.patlas_mapping.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.generator.components.reads_quality_control.rst		flowcraft.generator.components.reads_quality_control.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.generator.components.rst		flowcraft.generator.components.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.generator.components.typing.rst		flowcraft.generator.components.typing.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.generator.engine.rst		flowcraft.generator.engine.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.generator.error_handling.rst		flowcraft.generator.error_handling.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.generator.footer_skeleton.rst		flowcraft.generator.footer_skeleton.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.generator.header_skeleton.rst		flowcraft.generator.header_skeleton.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.generator.inspect.rst		flowcraft.generator.inspect.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.generator.pipeline_parser.rst		flowcraft.generator.pipeline_parser.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.generator.process.rst		flowcraft.generator.process.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.generator.process_details.rst		flowcraft.generator.process_details.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.generator.recipe.rst		flowcraft.generator.recipe.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.generator.rst		flowcraft.generator.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.rst		flowcraft.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.templates.assembly_report.rst		flowcraft.templates.assembly_report.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.templates.fastqc.rst		flowcraft.templates.fastqc.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.templates.fastqc_report.rst		flowcraft.templates.fastqc_report.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.templates.flowcraft_utils.flowcraft_base.rst		flowcraft.templates.flowcraft_utils.flowcraft_base.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.templates.flowcraft_utils.rst		flowcraft.templates.flowcraft_utils.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.templates.integrity_coverage.rst		flowcraft.templates.integrity_coverage.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.templates.mapping2json.rst		flowcraft.templates.mapping2json.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.templates.mashdist2json.rst		flowcraft.templates.mashdist2json.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.templates.mashscreen2json.rst		flowcraft.templates.mashscreen2json.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.templates.megahit.rst		flowcraft.templates.megahit.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.templates.metaspades.rst		flowcraft.templates.metaspades.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.templates.pATLAS_consensus_json.rst		flowcraft.templates.pATLAS_consensus_json.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.templates.pipeline_status.rst		flowcraft.templates.pipeline_status.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.templates.process_abricate.rst		flowcraft.templates.process_abricate.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.templates.process_assembly.rst		flowcraft.templates.process_assembly.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.templates.process_assembly_mapping.rst		flowcraft.templates.process_assembly_mapping.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.templates.rst		flowcraft.templates.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.templates.skesa.rst		flowcraft.templates.skesa.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.templates.spades.rst		flowcraft.templates.spades.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.templates.trimmomatic.rst		flowcraft.templates.trimmomatic.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.templates.trimmomatic_report.rst		flowcraft.templates.trimmomatic_report.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.tests.data_pipelines.rst		flowcraft.tests.data_pipelines.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.tests.rst		flowcraft.tests.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.tests.test_assemblerflow.rst		flowcraft.tests.test_assemblerflow.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.tests.test_engine.rst		flowcraft.tests.test_engine.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.tests.test_pipeline_parser.rst		flowcraft.tests.test_pipeline_parser.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.tests.test_process_details.rst		flowcraft.tests.test_process_details.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.tests.test_processes.rst		flowcraft.tests.test_processes.rst	Refactored assemblerflow to flowcraft	May 29, 2018
flowcraft.tests.test_sanity.rst		flowcraft.tests.test_sanity.rst	Refactored assemblerflow to flowcraft	May 29, 2018
index.rst		index.rst	Added recipe documentation. Closes #39	Sep 24, 2018
make.bat		make.bat	Added automatic doc building	Feb 5, 2018
setup.rst		setup.rst	Added automatic doc building	Feb 5, 2018
View all files