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NEWS.md

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FUNGuildR 0.3.0

  • NEMAGuild is (temporarily?) offline.
  • funguild_assign() and get_funguild_db() now return additional columns "guid" and "mbNumber" from the new version of FUNGuild
  • get_funguild_db() now returns the database as-is, without changing spaces to underscores in the species name, or adding the search key. The current funguild_assign() should still work with old locally cached databases, but older versions will not work with new cached databases.
  • Species names in the taxon column of funguild_assign() output now have a space instead of an underscore between the genus and species epithets.
  • Added function funguild_query() to submit queries to the FUNGuild web API. It also works with a locally cached database.
  • funguild_assign() now accepts Sintax ("k:", "p:"...) or Unite ("k__, "p__", ...) style taxonomy strings.
  • funguild_assign() now works in many cases when the Taxonomy column contains only genus or species names. The most complete results will still be achieved when the whole taxonomy string is included.
  • Fixed a bug where funguild_assign() incorrectly returned order- or family-level guild annotations even when genus- or species-level annotations were available.

FUNGuildR 0.2.0

  • Update default FUNGuild URL to use new version of FUNguild database (as in Guilds_v1.1.py) and correctly parse new database format.
  • Added a tax_col argument to funguild_assign/nemaguild_assign to allow use of a taxonomy column with a name other than "Taxonomy".
  • Fixed warning when using tidyr >= 1.0.0
  • Added a NEWS.md file to track changes to the package.