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sample information not shown PepQuery Web version #24

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gt7901b opened this issue May 1, 2020 · 2 comments
Closed

sample information not shown PepQuery Web version #24

gt7901b opened this issue May 1, 2020 · 2 comments

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@gt7901b
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gt7901b commented May 1, 2020

Hi, Bo:

I tried both TCGA_Breast_cancer_proteome and TCGA_Colon_cancer_proteome. When I selected row in Identification Result, the Sample Information is empty.

As for TCGA_breast_cancer_proteome, results in modification column says iTRAQ 4-plex. There seems to be multiple sample names in spectrum title. How will you display sample information? How do I know the query peptide in which sample?

thanks for your time

ww
2020-05-01_15-04-08pepquery

@wenbostar
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For TCGA_Breast_cancer_proteome dataset, please find sample mapping information in this file: https://cptac-data-portal.georgetown.edu/cptac/documents/CPTAC_TCGA_Breast_Cancer_iTRAQ_Sample_Mapping_r2_S015_S029_Sept2016.xlsx.

For TCGA_Colon_cancer_proteome dataset, please find sample mapping information in this file: https://cptac-data-portal.georgetown.edu/cptac/documents/CPTAC_TCGA_ColorectalCancer_select_clinical_data_r1.xlsx.

The spectrum column in the table contains the sample raw file information.

@gt7901b
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gt7901b commented May 1, 2020

Got it. thanks, Bo!

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