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how to generate a file in .gcsa2 format and in .graph format? #39

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xd-hbj opened this issue May 30, 2021 · 2 comments

xd-hbj commented May 30, 2021

Hello, how can I use the .fa file and the .vcf file to generate a .gcsa2 format or a .graph file? thanks a lot!

Owner

jltsiren commented Jun 1, 2021

The only way I'm aware of is using vg. You first build a graph with vg construct and then extract kmers with vg kmers.

Author

xd-hbj commented Jun 2, 2021

thanks!

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