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    18 repositories

    • hpap-public

      Public
      Contents of the "public" folder for PancDB front-end
      HTML
      •0•0•0•0•Updated Apr 25, 2025Apr 25, 2025

    • dockerize-workflows

      Public
      Genomic data processing pipelines written in WDL making use of Docker containers to ensure stability.
      dockerfilerna-seqdocker-imagebioinformatics-pipelinechip-seqatac-seqcromwellwdl-workflowcut-and-run
      WDL
      •0•2•2•0•Updated Apr 24, 2025Apr 24, 2025

    • chromatin-traces-vis

      Public
      chromatin traces visualization tool
      JavaScript
      •0•1•3•1•Updated Apr 9, 2025Apr 9, 2025

    • Azurify

      Public
      Jupyter Notebook
      •5•5•3•0•Updated Nov 26, 2024Nov 26, 2024

    • enhancer-promoter-hub

      Public
      Enhancer-promoter Hub
      R
      •0•2•0•0•Updated Jun 5, 2024Jun 5, 2024

    • hierarchical-spectral-clustering

      Public
      Hierarchical spectral clustering of a graph.
      Haskell
      •
      GNU General Public License v3.0
      •2•1•0•0•Updated May 23, 2024May 23, 2024

    • birch-beer

      Public
      Generate a tree for displaying a hierarchy of groups with colors, scaling, and more.
      Haskell
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated May 23, 2024May 23, 2024

    • too-many-cells

      Public
      Cluster single cells and analyze cell clade relationships with colorful visualizations.
      Haskell
      •
      GNU General Public License v3.0
      •18•10•0•0•Updated Feb 19, 2024Feb 19, 2024

    • wugb-utils

      Public
      WashU Genome Browser Utilities
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 4, 2024Jan 4, 2024

    • AnnoSpat

      Public
      Toolbox to automatically annotate cell types and quantify inter-cell communications in spatial proteomics
      Python
      •
      GNU General Public License v3.0
      •0•6•0•0•Updated Nov 17, 2023Nov 17, 2023

    • hpapdata-utils

      Public
      Python
      •0•0•0•0•Updated Apr 24, 2023Apr 24, 2023

    • ORCA-faryabiLab

      Public
      For automated processing of ORCA data. Version in Faryabi lab with some modifications
      MATLAB
      •6•0•0•0•Updated Aug 17, 2022Aug 17, 2022

    • HPAP-scRNA-seq-Workflow-2022

      Public
      Repository for HPAP-scRNA-seq data analysis
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •3•2•0•0•Updated May 5, 2022May 5, 2022

    • cpdUpenn

      Public
      CPD codes
      0•1•0•0•Updated Jul 19, 2019Jul 19, 2019

    • modularity

      Public
      Find the modularity of a network.
      Haskell
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Jan 10, 2019Jan 10, 2019

    • spectral-clustering

      Public
      Library for spectral clustering.
      Haskell
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jan 10, 2019Jan 10, 2019

    • differential

      Public
      Finds out whether an entity comes from different distributions (statuses).
      Haskell
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jan 10, 2019Jan 10, 2019

    • Spoon-Knife

      Public
      This repo is for demonstration purposes only.
      HTML
      •151k•0•0•0•Updated Sep 18, 2016Sep 18, 2016