update changelog

update impute tests for region and new syntax

rm the region options from CLI check

impute a specific region

start moving towards single-region

fixes and formatting

simplifiy rich end of format

better error text

unified BED parsing, move parameters to arg

rename workflow_call to snakemake_command

update changelog

change write_workflow_configs to accept output dir, not workflow dir

update all to new profile execution

update conda env to profile system

migrate to profile

death the harpy view, long live harpy view

add internal to changelog

Refreshes Retype-generated documentation.

add lr tech descriptions

continue support for BED regions

--genome to REFERENCE

replace --genome with --reference

fix

update API

update loggingAPI

update logger to new api

fix the test files

start modifying the conversion script

reduce filesize by trimming header

rm redundant header info to shrink