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With a particular mzML file that someone shared with me, the offset_dict is not built correctly the first time. When I run:
msrun = pymzml.run.Reader(test) msrun[0]
it gives "KeyError: 0". But, if I run:
msrun = pymzml.run.Reader(test) msrun[1] msrun[0]
all is good. It seems to only happen when calling msrun[0]. Other data that is not zero indexed is fine. The file was converted from MGF and is uploaded here.
Describe the bug
With a particular mzML file that someone shared with me, the offset_dict is not built correctly the first time. When I run:
msrun = pymzml.run.Reader(test)msrun[0]it gives "KeyError: 0". But, if I run:
msrun = pymzml.run.Reader(test)msrun[1]msrun[0]all is good. It seems to only happen when calling msrun[0]. Other data that is not zero indexed is fine. The file was converted from MGF and is uploaded here.
exportMGF_10spectra.zip
Any idea how to fix this?
To Reproduce
See above.
Desktop (please complete the following information):
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