diff --git a/src/rustllvm/PassWrapper.cpp b/src/rustllvm/PassWrapper.cpp
index 65071c3ed86e0..90d24d20737db 100644
--- a/src/rustllvm/PassWrapper.cpp
+++ b/src/rustllvm/PassWrapper.cpp
@@ -868,8 +868,10 @@ LLVMRustOptimizeWithNewPassManager(
     } else {
       for (const auto &C : PipelineStartEPCallbacks)
         PB.registerPipelineStartEPCallback(C);
-      for (const auto &C : OptimizerLastEPCallbacks)
-        PB.registerOptimizerLastEPCallback(C);
+      if (OptStage != LLVMRustOptStage::PreLinkThinLTO) {
+        for (const auto &C : OptimizerLastEPCallbacks)
+          PB.registerOptimizerLastEPCallback(C);
+      }
 
       switch (OptStage) {
       case LLVMRustOptStage::PreLinkNoLTO:
@@ -877,6 +879,12 @@ LLVMRustOptimizeWithNewPassManager(
         break;
       case LLVMRustOptStage::PreLinkThinLTO:
         MPM = PB.buildThinLTOPreLinkDefaultPipeline(OptLevel, DebugPassManager);
+        if (!OptimizerLastEPCallbacks.empty()) {
+          FunctionPassManager FPM(DebugPassManager);
+          for (const auto &C : OptimizerLastEPCallbacks)
+            C(FPM, OptLevel);
+          MPM.addPass(createModuleToFunctionPassAdaptor(std::move(FPM)));
+        }
         break;
       case LLVMRustOptStage::PreLinkFatLTO:
         MPM = PB.buildLTOPreLinkDefaultPipeline(OptLevel, DebugPassManager);
diff --git a/src/test/codegen/sanitizer-recover.rs b/src/test/codegen/sanitizer-recover.rs
index 9a583725b0bf0..05b4ab5653cc8 100644
--- a/src/test/codegen/sanitizer-recover.rs
+++ b/src/test/codegen/sanitizer-recover.rs
@@ -14,8 +14,8 @@
 //[MSAN-RECOVER-LTO] compile-flags: -Zsanitizer=memory  -Zsanitizer-recover=memory -C lto=fat
 //
 // MSAN-NOT:         @__msan_keep_going
-// MSAN-RECOVER:     @__msan_keep_going = weak_odr {{.*}} constant i32 1
-// MSAN-RECOVER-LTO: @__msan_keep_going = weak_odr {{.*}} constant i32 1
+// MSAN-RECOVER:     @__msan_keep_going = weak_odr {{.*}}constant i32 1
+// MSAN-RECOVER-LTO: @__msan_keep_going = weak_odr {{.*}}constant i32 1
 
 // ASAN-LABEL: define i32 @penguin(
 // ASAN:         call void @__asan_report_load4(i64 %0)
diff --git a/src/test/ui/sanitize/new-llvm-pass-manager-thin-lto.rs b/src/test/ui/sanitize/new-llvm-pass-manager-thin-lto.rs
new file mode 100644
index 0000000000000..61d5d51cfd248
--- /dev/null
+++ b/src/test/ui/sanitize/new-llvm-pass-manager-thin-lto.rs
@@ -0,0 +1,27 @@
+// Regression test for sanitizer function instrumentation passes not
+// being run when compiling with new LLVM pass manager and ThinLTO.
+// Note: The issue occured only on non-zero opt-level.
+//
+// min-llvm-version 9.0
+// needs-sanitizer-support
+// only-x86_64
+//
+// no-prefer-dynamic
+// revisions: opt0 opt1
+// compile-flags: -Znew-llvm-pass-manager=yes -Zsanitizer=address -Clto=thin
+//[opt0]compile-flags: -Copt-level=0
+//[opt1]compile-flags: -Copt-level=1
+// run-fail
+// error-pattern: ERROR: AddressSanitizer: stack-use-after-scope
+
+static mut P: *mut usize = std::ptr::null_mut();
+
+fn main() {
+    unsafe {
+        {
+            let mut x = 0;
+            P = &mut x;
+        }
+        std::ptr::write_volatile(P, 123);
+    }
+}
diff --git a/src/tools/compiletest/src/header/tests.rs b/src/tools/compiletest/src/header/tests.rs
index 38fa778219de2..6c478f7e29da4 100644
--- a/src/tools/compiletest/src/header/tests.rs
+++ b/src/tools/compiletest/src/header/tests.rs
@@ -109,6 +109,24 @@ fn no_system_llvm() {
     assert!(parse_rs(&config, "// no-system-llvm").ignore);
 }
 
+#[test]
+fn llvm_version() {
+    let mut config = config();
+
+    config.llvm_version = Some("8.1.2-rust".to_owned());
+    assert!(parse_rs(&config, "// min-llvm-version 9.0").ignore);
+
+    config.llvm_version = Some("9.0.1-rust-1.43.0-dev".to_owned());
+    assert!(parse_rs(&config, "// min-llvm-version 9.2").ignore);
+
+    config.llvm_version = Some("9.3.1-rust-1.43.0-dev".to_owned());
+    assert!(!parse_rs(&config, "// min-llvm-version 9.2").ignore);
+
+    // FIXME.
+    // config.llvm_version = Some("10.0.0-rust".to_owned());
+    // assert!(!parse_rs(&config, "// min-llvm-version 9.0").ignore);
+}
+
 #[test]
 fn ignore_target() {
     let mut config = config();