Wrong R script "{overwrite = TRUE.} in Add_Cell_QC_Metrics

[chaesee1]

qc_orig <- Add_Cell_QC_Metrics(seurat_object = qc_orig, species = "human", overwrite = T)

#Adding Mito/Ribo Percentages to meta.data.
#Columns with "percent_mito" and/or "percent_ribo" already present in meta.data slot.
#! Overwriting those columns as overwrite = TRUE.
#Adding Cell Complexity #1 (log10GenesPerUMI) to meta.data.
#Adding Cell Complexity #2 (Top 50 Percentages) to meta.data.
#Calculating percent expressing top 50 for layer: counts
#Adding MSigDB Oxidative Phosphorylation, Apoptosis, and DNA Repair Percentages to meta.data.
#Adding IEG Percentages to meta.data.
#Layer with normalized data not present.
#ℹ Normalizing Data.
#Normalizing layer: counts
#Performing log-normalization
#0% 10 20 30 40 50 60 70 80 90 100%
#[----|----|----|----|----|----|----|----|----|----|
#**************************************************|
#Error in lapply(text, glue_cmd, .envir = .envir):
#! Could not evaluate cli {} expression: overwrite = TRUE..
#Caused by error in eval(expr, envir = envir):
#! object 'TRUE.' not found
#Type .Last.error to see the more details.

sessionInfo() output

PASTE HERE sessionInfo() output

[samuel-marsh]

Hi @chaesee1,

Apologies for the bug! This is now fixed in the develop branch (v2.1.2.9002). If you have any issues running the function aftering updating to the dev branch please let me know and I'll reopen the issue.

Thanks!
Sam