Y25-225 - Fail Wells on BGE Lib XP2 plate

[yoldas]

User story

As team lead and user of BGE pipeline, Sara W, I would like to have an option to fail wells on BGE Lib XP2 plate at the end of BGE pipeline 1 (PCR Free library prep). The Fails Well option is missing on the BGE Lib XP2 plate but it is present on the BGE Lib PCR XP plate.

Who are the primary contacts for this story

Sara W.
Liz C.
Matt M.
Jamie L.
Ben T.
Abdullah Y.
Andrew S.

Who is the nominated tester for UAT

Sara W.
Jamie L.

Acceptance criteria

Consider if these features can be featured flagged to decouple testing and deployment.
To be considered successful the solution must allow:

• Enable the Fail Wells option and functionality on BGE Lib XP2 plate

Dependencies

This story is blocked by the following dependencies:

• Y24-367 - As a staff scientist I would like to have a separate pipeline for the new BGE project #1980

References
This story has a non-blocking relationship with:
N/A

Additional context

The issue was discovered in UAT of #1980 on 12 March 2025.

About the BGE Lib XP2 plate:

As seen on the process diagram, the BGE Lib XP2 plate is at the end of the pipeline 1 (PCR Free library prep) and it continues to pipeline 2 (PCR Free MX) and it is a branch point for pipeline 3 (PRC free to ISC; transition pipeline). There is a submission option (BGE Transition - Automated) on the plate to enable pipeline 3, which is provided by PermissiveSubmissionPlatePresenter. It also automatically closes the limber_bge_pcr_free request.

Look into the presenter and remove the permissive behaviour in a new presenter if necessary. The presenter was used as it is for the workflow selection (branching off to pipeline 3; PCR Free to ISC; transition pipeline).

Fail Wells button is expected in the Other Actions panel in the page.

Screenshots

The following screenshots were generated by running the integration suite against UAT with break points. The plate with barcode SQPU-214035-F was observed.

Pending:

Passed (before branching to pipeline 3):

Deployment notes

Standard Limber deployment.