stat_summary_bin strange behavior when combined with scale_y_*

[mkoohafkan]

Attempting to do a binned summation of data via fun.y with stat_summary_bin and represent as a line. I get strange y-axis labels when combining with a scale_y_* aesthetic. It looks like a bug to me, but perhaps I misunderstand how to use stat_summary_bin.

library(ggplot2)
ggplot(mtcars) +
  aes(x = disp, y = mpg) +
  stat_summary_bin(fun.y = sum, binwidth = 2.5,
    geom = "line", size = 1)

ggplot(mtcars) +
  aes(x = disp, y = mpg) +
  stat_summary_bin(fun.y = sum, binwidth = 2.5,
    geom = "line", size = 1) +
  scale_y_log10()

ggplot(mtcars) +
  aes(x = disp, y = mpg) +
  stat_summary_bin(fun.y = sum, binwidth = 2.5,
    geom = "line", size = 1) +
  scale_y_sqrt()

Created on 2018-09-04 by the reprex package (v0.2.0).

[yutannihilation]

This issue seems the same as #2804 (comment). stat_summary_bin() summarises the values after transformation, which is a kind of implementational limitation so is unlikely to change.

You can restore the transformation (e.g. 10^x), then summarise (e.g. sum()), and finally transform (e.g. log10()) again. But, it would be easier to summarise data before passing it to ggplot2...

library(ggplot2)

ggplot(mtcars) +
  aes(x = disp, y = mpg) +
  stat_summary_bin(fun.y = function(x) log10(sum(10^x)), binwidth = 2.5,
                   geom = "line", size = 1) +
  scale_y_log10()

Created on 2018-09-05 by the reprex package (v0.2.0).

[mkoohafkan]

Thanks for the explanation @yutannihilation. The workaround makes sense and after reading that issue I understand that changing this behavior would be a big undertaking. I think a warning or explanation in the documentation for stat_summary-bin would be helpful for future reference.

It's nice to be able to do this operation with stat_summary_bin rather than summarizing beforehand because defining the bins and axis labels for passing to ggplot can get pretty annoying.

[yutannihilation]

Ah, sorry, I was wrong! During search for the document about this, I found we can use coord_trans(). ?stat_summary says:

# Transforming the scale means the data are transformed
# first, after which statistics are computed:
p1 <- m2 + scale_y_log10()
# Transforming the coordinate system occurs after the
# statistic has been computed. This means we're calculating the summary on the raw data
# and stretching the geoms onto the log scale.  Compare the widths of the
# standard errors.
p2 <- m2 + coord_trans(y="log10")

So, in this case you could write like p2 in the following code:

library(ggplot2)

p <- ggplot(mtcars) +
  aes(x = disp, y = mpg) +
  stat_summary_bin(fun.y = sum, binwidth = 2.5,
                   geom = "line", size = 1)

p1 <- p + scale_y_log10()
p2 <- p + coord_trans(y = "log10")

egg::ggarrange(p1, p2)

Created on 2018-09-05 by the reprex package (v0.2.0).

[yutannihilation]

IIUC, the summary of #2804 is:

• If you don't care much if lines will curve or not, you can use coord_trans().
• If you do want straight lines, you can use that "restore-summarise-retransform" strategy.

[mkoohafkan]

Oh wow, it is in the docs after all... but hidden in an example. I do think this nuance regarding the transform --> stat vs. stat-->transform order of operations should be described in the Summary functions section.

Thanks for pointing out these two options for resolving the issue.

[yutannihilation]

Agreed that there should be a section for this in the doc of stat_summary() and stat_summary_bin().

But..., transform --> stat vs. stat-->transform seems more general topic. I have no idea where this fits...

[mkoohafkan]

I think just a note about using stat_summary* with scale/coordinate transformations should suffice. The existing comments in the example explain it in necessary depth. Slightly reworded:

Note that scale transformations occur before statistics are computed, while coordinate system transformations occur after statistics are computed.

[teunbrand]

The existing comments in the example explain it in necessary depth.

Closing this issue for the reason above.