Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis

A library for deisotoping and charge state deconvolution of complex mass spectra

A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML

Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data

Read popular mass spectrometry formats

Convert between common MS data formats.

The NFDI4Chem converter service is a REST API and Python server implementation to convert mass spectrometry data from various instrument vendors and converts into the open mzML format using proteowizard-msconvert . It also allows validation of the converted mzML file using the OpenMS FileInfo tool.

Select specified scans and precursors from a mzML file

A simple Python program to split and reconstruct mzML files to XML and binary counterparts.

A very basic mzml file plotting program that can plot single scans, merge all scans from a file, plot the TIC, and plot an EIC of a chosen m/z value.

A competition set out to determine the best encoding/decoding methods for mass spectrometry data.