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Adding custom genomes doesn't work for non-Chr naming #55

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ChangxuFan opened this issue Mar 20, 2025 · 1 comment
Open

Adding custom genomes doesn't work for non-Chr naming #55

ChangxuFan opened this issue Mar 20, 2025 · 1 comment
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@shaneliu0

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@ChangxuFan
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The human genome is organized into chromosomes (chr1, chr2, ... etc), but viral and bacterial genomes are not. Therefore, there is no "chr" naming for these genomes. Attached is an illustration of the browser breaking when attempting to upload a SARS-CoV-2 genome.

Also for human genomes, only scaffolded genomes have chr naming: most genomes from HPRC don't have chromosomes either since they are on the contig level.

Screen.Recording.2025-03-20.at.8.01.12.AM.mp4
@lidaof
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lidaof commented Mar 20, 2025

@ChangxuFan this is a great point! We will work on this.

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@lidaof @shaneliu0 @ChangxuFan