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Copy path4DN_GM12878_K562_mcools.tsv
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4DN_GM12878_K562_mcools.tsv
1 | ### | N.B.: File summary located at bottom of TSV file. | Suggested command to download: | cut -f 1 ./4DNESI7DEJTM_processed_files_2021-09-28-15h-28m.tsv | tail -n +3 | grep -v ^# | xargs -n 1 curl -O -L --user <access_key_id>:<access_key_secret> | |||||||||||||||||||||||||||
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2 | File Download URL | Experiment Set Accession | Experiment Accession | File Accession | Size (MB) | md5sum | File Type | File Format | Bio Rep No | Tech Rep No | Biosource Type | Organism | Related File Relationship | Related File | Paired End | Set Status | File Status | Publication | Experiment Type | Replicate Info | Assay Details | Biosource | Dataset | Condition | In Experiment As | Project | Generating Lab | Experimental Lab | Contributing Lab | Notes | Open Data URL |
3 | https://data.4dnucleome.org/files-processed/4DNFI18UHVRO/@@download/4DNFI18UHVRO.mcool | 4DNESI7DEJTM | 4DNEX4QXTLZ9, 4DNEX8PBXPIN, 4DNEX3CGGK34, 4DNEXC7SDGS9, 4DNEX8IKSYIC, 4DNEXH2JC926 | 4DNFI18UHVRO | 7554.36 | N/A | contact matrix | mcool | 2, 1, 2, 2, 1, 2 | 2, 2, 4, 3, 1, 1 | immortalized cell line | human | N/A | N/A | N/A | released | released | Rao SS et al. (2014) | in situ Hi-C | merged replicates | MboI | K562 | Hi-C on K562 | in situ Hi-C on K562 with MboI and bio-dATP (higher crosslinker concentration) | processed file | External | 4DN DCIC, HMS | Erez Lieberman Aiden, BCM | N/A | N/A | https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/230ad652-0232-47f2-97ef-296c7a040bd9/4DNFI18UHVRO.mcool |
4 | https://data.4dnucleome.org/files-processed/4DNFIXP4QG5B/@@download/4DNFIXP4QG5B.mcool | 4DNES3JX38V5 | 4DNEXMJINPYT, 4DNEX54HU8XJ, 4DNEXLEMVRUN, 4DNEXONPRHBY, 4DNEXCTPS9D2, 4DNEX9JW7KES, 4DNEX3PK2XOV, 4DNEXC6G8UBB, 4DNEXBFE7CLD, 4DNEXQLJSIIN, 4DNEX5D543VH, 4DNEX3Y75KYE, 4DNEXN4F64GI, 4DNEX3S5G6AI, 4DNEXRL9HLXS, 4DNEXYZQHUM3, 4DNEX61JT6V1, 4DNEXPEYBGGZ, 4DNEXS8V14UB, 4DNEXZKBU7YD, 4DNEX4ZN3FIX, 4DNEXGT6EKP6, 4DNEX456IBLL, 4DNEXI9XV73W, 4DNEX3UQJRK9, 4DNEXB3PV79J, 4DNEX9UX4QD6, 4DNEX88U4LFS, 4DNEXVCYTTRC, 4DNEXYS6X7PF, 4DNEX9XR5X2J, 4DNEXRUUAK37, 4DNEX6YCN9YB, 4DNEXWOIPF4F, 4DNEXEMDIXME, 4DNEX1I1E292, 4DNEX9ROG1T9, 4DNEX3RRUA2C, 4DNEXCJ5TMNI, 4DNEXFH9WBIP, 4DNEX4OX97OR, 4DNEXIUTQ5DJ, 4DNEXN9TLBUO, 4DNEXEJM8STO, 4DNEXTGAYSZ3, 4DNEXVRTTDA4, 4DNEXNGFYMDJ, 4DNEXE74JYOW, 4DNEXWMTBGBE, 4DNEX5LRCIOK, 4DNEXRMXH59Q, 4DNEXHU7XZ7R, 4DNEXFXDDEQ8, 4DNEX1CUOTX3, 4DNEX25UCOPV, 4DNEXNEX9DN1, 4DNEXBE6G2BV, 4DNEXR9VBXYE, 4DNEXSEA88SK, 4DNEXAP9J682, 4DNEXMIMM53Q, 4DNEXGICX1EU, 4DNEX8IGST7K, 4DNEXG8J7FTZ, 4DNEX7QKUHTH, 4DNEX6JBYI4K, 4DNEX58TCR1Y, 4DNEXGH58UWK, 4DNEXNSJLJUS, 4DNEXLHGDM32, 4DNEX1ME9QIL, 4DNEX6DDM725 | 4DNFIXP4QG5B | 26139.15 | a4ff0d005aa78bcd544977b29f152ee6 | contact matrix | mcool | 17, 1, 6, 4, 14, 22, 1, 1, 2, 7, 8, 1, 6, 6, 18, 1, 2, 1, 7, 1, 10, 1, 1, 1, 3, 1, 6, 1, 10, 16, 11, 13, 1, 5, 6, 1, 3, 15, 20, 19, 3, 21, 1, 5, 10, 9, 1, 15, 5, 1, 1, 1, 12, 3, 18, 3, 13, 13, 1, 1, 1, 1, 1, 14, 19, 22, 19, 1, 1, 1, 1, 10 | 1, 1, 1, 1, 2, 1, 24, 8, 2, 1, 1, 9, 3, 4, 1, 15, 1, 6, 2, 27, 3, 5, 7, 16, 2, 26, 2, 23, 1, 1, 1, 2, 13, 1, 5, 10, 5, 2, 1, 3, 3, 1, 25, 2, 2, 1, 18, 1, 3, 2, 21, 4, 1, 4, 2, 1, 1, 3, 28, 11, 19, 20, 14, 1, 1, 2, 2, 22, 3, 12, 17, 4 | immortalized cell line | human | N/A | N/A | N/A | released | released | Rao SS et al. (2014) | in situ Hi-C | merged replicates | MboI | GM12878 | Hi-C on GM12878 cells - protocol variations | Preferred protocol - in situ Hi-C on GM12878 with MboI and bio-dATP | processed file | External | 4DN DCIC, HMS | Erez Lieberman Aiden, BCM | N/A | N/A | https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/d6abea45-b0bb-4154-9854-1d3075b98097/4DNFIXP4QG5B.mcool |