Quality control workflow for Illumina sequencing data
From v2.0.0 the scripts have been refactored to use SLURM scheduling on WREN.
Launch from /data/output/fastq/<seqId> directory:
sbatch --export=sourceDir=<path-to-seq-dir> <path-to-IlluminaQC-directory>/1_IlluminaQC.sh
Validation runs will be saved under /data/output/validations/ if lanched:
sbatch --export=sourceDir=<path-to-seq-dir>,validation=TRUE <path-to-IlluminaQC-directory>/1_IlluminaQC.sh
alternativly individuel samples can be desiganted as validation samples within the samplsheet (ad validation=TRUE to description field)