Skip to content
View Adamtaranto's full-sized avatar
58 followers · 69 following

Achievements

Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: StarstruckAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

Achievements

Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: StarstruckAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

Highlights

  • Pro

Organizations

@COMBINE-Canberra @bioconda

Block or report Adamtaranto

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
Adamtaranto/README.md

Adam Taranto

I'm a research software engineer, genome biologist, and educator who helps researchers of all levels improve their computer science and data science skills.

👩‍💻 What I'm currently working on

  • tanghaibao/jcvi - Python library to facilitate genome assembly, annotation, and comparative genomics (today)
  • Adamtaranto/deRIP2 - Predict progenitor sequence of fungal repeat families by correcting for RIP-like mutations and cytosine deamination events. Mask RIP or deamination events from alignments. (3 days ago)
  • Adamtaranto/teloclip - A tool for the recovery of unassembled telomeres from soft-clipped read alignments. (3 days ago)
  • Adamtaranto/TIRmite - Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons. (3 days ago)
  • oxli-bio/oxli - k-mers and the like (2 weeks ago)

🔭 Latest releases I've contributed to

GitHub Stats GitHub Streak

Pinned Loading

  1. teloclip teloclip Public

    A tool for the recovery of unassembled telomeres from soft-clipped read alignments.

    Python 35 4

  2. TIRmite TIRmite Public

    Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.

    Python 10 4

  3. deRIP2 deRIP2 Public

    Predict progenitor sequence of fungal repeat families by correcting for RIP-like mutations and cytosine deamination events. Mask RIP or deamination events from alignments.

    Python

  4. TRF2GFF TRF2GFF Public

    Convert Tandem Repeat Finder dat file output into gff3 format

    Python 26 5