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@AndersenLab

Andersen Lab

Johns Hopkins University

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  1. CAENDR Public

    HTML 4 3

Repositories

Showing 10 of 190 repositories
  • ce_cb_ct_betatubulin Public
    PostScript 0 0 0 0 Updated Apr 6, 2025
  • nemascan-sims-nf Public

    Nextflow workflow for running GWA simulations

    Nextflow 0 0 1 0 Updated Apr 6, 2025
  • Ce_geneAnno-sh Public

    This repository contains the scripts used to assess the presence/absence of Caenorhabditis elegans ref genome genes across all wild strains. Genes are classified as "core", "soft-core", "rare", or "private" based on the frequency at which they occur in wild strains.

    Jupyter Notebook 0 0 0 0 Updated Apr 4, 2025
  • andersenlab.github.io Public

    Andersen Lab Website

    HTML 2 MIT 3 0 2 Updated Mar 19, 2025
  • alignment-nf Public

    A nextflow pipeline for genome sequences alignment

    Nextflow 1 MIT 0 1 0 Updated Mar 14, 2025
  • variantanno-sh Public

    Shells scripts to run tools (SIFT, VEP, ANNOVAR) to annotate variants in selfing Caenorhabditis WI VCFs

    Shell 0 0 0 0 Updated Mar 12, 2025
  • caenorhabditis_colors Public

    Color codes for Caenorhabditis species and strains

    0 0 0 0 Updated Mar 10, 2025
  • isotype-nf Public

    Nextflow pipeline for calling isotype groups

    Python 0 MIT 0 0 0 Updated Mar 5, 2025
  • pathogenDiscovery-sh Public

    C. elegans pathogen discovery through taxonomic classification from unaligned wild strains reads

    Shell 0 0 0 0 Updated Mar 4, 2025
  • NemaScan Public

    GWA Mapping and Simulation with C. elegans, C. tropicalis, and C. briggsae

    R 2 3 9 0 Updated Feb 28, 2025
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