Bitbol-Lab
Popular repositories Loading
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ProtMamba-ssm
ProtMamba-ssm PublicProtMamba: a homology-aware but alignment-free protein state space model
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Iterative_masking
Iterative_masking PublicIterative masking algorithm on MSA Transformer to generate synthetic sequences
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Phylogeny-MSA-Transformer
Phylogeny-MSA-Transformer PublicSupporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www.nature.com/articles/s41467-022-34032-y)
Repositories
- partial_sampling_spatially_structured_population Public
Repository for my lab immersion on spatially structured populations with partial updates.
- Phylogeny-MSA-Transformer Public
Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www.nature.com/articles/s41467-022-34032-y)
- Phylogeny-ESM2 Public
Monte-Carlo generation of synthetic multiple sequence alignments along phylogenetic trees using a protein language model
- fitness-landscapes Public
- DrugRes_StructPop Public
Repository for "Spatial structure facilitates evolutionary rescue by cost-free drug resistance" (2024) by C. Fruet, E. L. Müller, C. Loverdo, and A.-F. Bitbol.
- ProtMamba-frozen-nips Public
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