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CaiGroup

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  1. seqFISH-PLUS seqFISH-PLUS Public

    MATLAB 50 10

  2. dna-seqfish-plus dna-seqfish-plus Public

    dna seqfish image analysis code

    MATLAB 8 1

  3. Intron-SeqFISH Intron-SeqFISH Public

    used for intron seqFISH

    MATLAB 6 1

  4. RNA-SPOTs RNA-SPOTs Public

    Scripts for image processing used in RNA SPOTs

    MATLAB 5 1

  5. dna-seqfish-plus-tissue dna-seqfish-plus-tissue Public

    DNA seqFISH+ tissue analysis code and probe sequences

    MATLAB 4

  6. dna-seqfish-plus-multi-omics dna-seqfish-plus-multi-omics Public

    Spatial multi-omics analysis code and additional resources

    Jupyter Notebook 4

Repositories

Showing 10 of 12 repositories
  • SeqFISH_ADCG.jl Public
    CaiGroup/SeqFISH_ADCG.jl’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 6, 2025
  • pyfish_tools Public

    This repository contains various algorithms for analyzing image-based datasets, with a primary focus towards fluorescent in situ hybridization data.

    CaiGroup/pyfish_tools’s past year of commit activity
    Python 2 2 0 0 Updated Mar 24, 2025
  • dna-seqfish-plus-multi-omics Public

    Spatial multi-omics analysis code and additional resources

    CaiGroup/dna-seqfish-plus-multi-omics’s past year of commit activity
    Jupyter Notebook 4 MIT 0 0 0 Updated Jan 13, 2025
  • DNASeqFISHChromosomeAssignment.jl Public
    CaiGroup/DNASeqFISHChromosomeAssignment.jl’s past year of commit activity
    Julia 1 MIT 0 0 0 Updated Dec 20, 2023
  • seqFISH_datapipeline_public Public

    A generalized pipeline written in python to process seqFISH data.

    CaiGroup/seqFISH_datapipeline_public’s past year of commit activity
    0 0 0 0 Updated Jan 18, 2023
  • datapipeline-public Public
    CaiGroup/datapipeline-public’s past year of commit activity
    Python 1 0 0 0 Updated Apr 15, 2022
  • dna-seqfish-plus-tissue Public

    DNA seqFISH+ tissue analysis code and probe sequences

    CaiGroup/dna-seqfish-plus-tissue’s past year of commit activity
    MATLAB 4 0 0 0 Updated Sep 14, 2021
  • seqFISH-PLUS Public
    CaiGroup/seqFISH-PLUS’s past year of commit activity
    MATLAB 50 10 5 0 Updated Apr 1, 2021
  • dna-seqfish-plus Public

    dna seqfish image analysis code

    CaiGroup/dna-seqfish-plus’s past year of commit activity
    MATLAB 8 1 0 0 Updated Dec 5, 2020
  • Intron-SeqFISH Public

    used for intron seqFISH

    CaiGroup/Intron-SeqFISH’s past year of commit activity
    MATLAB 6 1 0 0 Updated May 11, 2018
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