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1. Cirro-client Cirro-client Public

   Python SDK to interact with Cirro

   Python 3

2. nf-humann nf-humann Public

   Nextflow workflow running the HUMAnN metagenomic analysis tool

   Nextflow 2

3. nf-arcashla nf-arcashla Public

   Nextflow workflow to perform HLA typing from RNAseq data (arcasHLA)

   Nextflow 1

4. Cirro-local-agent Cirro-local-agent Public

   Agent to run workloads on local HPC environment

   Java 1

5. ampliseq ampliseq Public

   Forked from nf-core/ampliseq

   Amplicon sequencing analysis workflow using DADA2 and QIIME2

   Nextflow

6. nfcore-test-datasets nfcore-test-datasets Public

   Forked from nf-core/test-datasets

   Test data to be used for automated testing with the nf-core pipelines