AoU_WDL

Repository for storing WDL workflows for execution in the AoU Researcher Workbench

Name	Name	Last commit message	Last commit date
Latest commit jwertz01 Support gzipped fastas and multiple loci Jan 22, 2025 3dcd21d · Jan 22, 2025 History 72 Commits
align_asm	align_asm	Updated docker incl minimap 2.28, param adjustments	Nov 27, 2024
align_reads_to_contigs	align_reads_to_contigs	Concatenate both haplotypes first, output cram instead of bam, more m…	Dec 14, 2023
asm_stats	asm_stats	hap error	Oct 23, 2023
bam_to_contig	bam_to_contig	Support gzipped fastas and multiple loci	Jan 22, 2025
callerset_combine	callerset_combine	Added callerset	Apr 2, 2023
count_genotypes/workflow	count_genotypes/workflow	Added callerset	Apr 2, 2023
docker	docker	Activate svpop	Sep 7, 2023
intersect_callers	intersect_callers	adding code for intersect	May 16, 2023
intersect_pav	intersect_pav	GT Count	Apr 1, 2023
sfs	sfs	Added svpop	Feb 6, 2024
svpop	svpop	Inter scripts	Feb 9, 2024
vcf_to_bed	vcf_to_bed	updates sniffles parser	May 16, 2023
README.md	README.md	Initial commit	Mar 17, 2023

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