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  1. DL4Proteins-notebooks DL4Proteins-notebooks Public

    Colab Notebooks covering deep learning tools for biomolecular structure prediction and design

    Jupyter Notebook 355 51

  2. IgFold IgFold Public

    Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

    Python 353 66

  3. IgLM IgLM Public

    Generative Language Modeling for Antibody Design

    Python 145 27

  4. GeoDock GeoDock Public

    Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.

    Python 91 14

  5. AlphaRED AlphaRED Public

    AlphaFold-initiated replica exchange protein docking

    Python 76 14

  6. FLAb FLAb Public

    Fitness landscapes for antibodies

    Python 68 13

Repositories

Showing 10 of 16 repositories
  • DL4Proteins-notebooks Public

    Colab Notebooks covering deep learning tools for biomolecular structure prediction and design

    Graylab/DL4Proteins-notebooks’s past year of commit activity
    Jupyter Notebook 355 MIT 51 2 1 Updated Apr 3, 2025
  • picap Public

    CAPSIF2 and PiCAP

    Graylab/picap’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 17, 2025
  • DFMDock Public

    DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.

    Graylab/DFMDock’s past year of commit activity
    Python 43 MIT 5 2 1 Updated Mar 17, 2025
  • AlphaRED Public

    AlphaFold-initiated replica exchange protein docking

    Graylab/AlphaRED’s past year of commit activity
    Python 76 MIT 14 7 3 Updated Mar 12, 2025
  • FLAb Public

    Fitness landscapes for antibodies

    Graylab/FLAb’s past year of commit activity
    Python 68 MIT 13 4 0 Updated Jan 13, 2025
  • MaskedProteinEnT Public
    Graylab/MaskedProteinEnT’s past year of commit activity
    Python 11 4 0 2 Updated Dec 2, 2024
  • IgLM Public

    Generative Language Modeling for Antibody Design

    Graylab/IgLM’s past year of commit activity
    Python 145 27 5 0 Updated Oct 5, 2024
  • GeoDock Public

    Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.

    Graylab/GeoDock’s past year of commit activity
    Python 91 MIT 14 6 0 Updated Jul 29, 2024
  • MPDock Public

    This repository contains the dataset of 29 transmembrane protein complexes of different rigidity along with their unbound protein structure. Additionally, there are scripts to submit relaxing and docking complexes given there unbound monomer structures.

    Graylab/MPDock’s past year of commit activity
    Python 4 MIT 0 0 0 Updated Jul 5, 2024
  • Implicit-Membrane-Energy-Function-Benchmark Public

    This is a set of scientific benchmark tests for evaluating membrane protein modeling energy functions. The test probe an energy function's ability to capture membrane protein orientation, stability, sequence, and structure. The methods are described in detail in the citations below.

    Graylab/Implicit-Membrane-Energy-Function-Benchmark’s past year of commit activity
    Scala 2 MIT 0 0 0 Updated Jan 19, 2024
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