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  • Canada

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Achievement: QuickdrawAchievement: StarstruckAchievement: Pull Shark

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Lambda-Epsilon/README.md

Erik

Biochemist with a focus in bioinformatics, data infrastructure, and scientific computing.

Core Areas:

  • NGS & SELEX Pipelines: Snakemake · Nextflow · FastQC · Cutadapt · DESeq2
  • Enrichment & Motif Analysis: Python scripting · MEME Suite
  • HPC & Automation: Bash · SLURM · Linux administration · Micromamba · Docker · Singularity
  • Data Infrastructure: Python · R · SQL (MySQL, PostgreSQL) · LIMS integration · REST APIs
  • Analytics & Reporting: R (ggplot2) · scikit‑learn · Excel/VBA/PowerQuery · Power BI

Toolbox:
Python · R · Bash · SQL (MySQL, PostgreSQL) · JavaScript · HTML · C · Biopython · DESeq2 · scikit‑learn · ggplot2 · FastQC · Cutadapt · MEME Suite · Snakemake · Nextflow · SLURM · Docker · Singularity · Linux · Git · VBA · PowerQuery · Power BI · QIIME2 · REST APIs · LIMS

Pinned Loading

  1. linux-server-rapl-powermonitor linux-server-rapl-powermonitor Public

    Small script using Intel's RAPL feature to estimate power usage of CPU package(s).

    C 1

  2. ht-selex-demo ht-selex-demo Public

    Snakemake pipeline for processing high-throughput SELEX sequencing data, including trimming, enrichment analysis, and motif discovery.

    Python 1