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428 Open 1,890 Closed
428 Open 1,890 Closed
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Issues list

remove default channel from RTD conda env Continuous Integration installation
#5036 opened Apr 18, 2025 by orbeckst
1
Optimization Suggestion: Replace np.ediff1d with array slicing for faster difference-based splitting
#5033 opened Apr 18, 2025 by dbsi-pinkman
Query: amino acid residue charges Format-Amber question
#5032 opened Apr 18, 2025 by tylerjereddy
1
Support for Amber NetCDF Restart Files (.ncrst)
#5030 opened Apr 17, 2025 by jeremyleung521
1
Support for MDAnalysis packages dealing with non-linear time dump
#5028 opened Apr 16, 2025 by gitsirsha
Remove macos-13 runners from standard tests Continuous Integration decision needed requires input from developers before moving further OpSys-OSX
#5023 opened Apr 11, 2025 by IAlibay
@IAlibay
4
update license string to SPDX Component-Docs installation
#5022 opened Apr 11, 2025 by orbeckst
@orbeckst @RMeli @IAlibay
3
Guessing the psf format type for VMD written psf files is wrong
#5019 opened Apr 8, 2025 by pbuslaev
Support for LAMMPS LJ reduced units enhancement format-LAMMPS
#5009 opened Apr 2, 2025 by timbernat
1
Clean API pages - modules 1, 2, 3, 4
#4998 opened Mar 29, 2025 by namiroues
1
2
Integration & Cleanup of API Documentation Content SDG23 work on Small Development Grant 2023
#4989 opened Mar 23, 2025 by namiroues
2
Edit transformations on a Universe
#4980 opened Mar 18, 2025 by BradyAJohnston
remove analysis.encore for 3.0 Component-Analysis MDAKit suitable for MDAKit remove-3.0 deprecated and remove in release 3.0
#4971 opened Mar 15, 2025 by orbeckst
4 tasks
Release 3.0
@IAlibay
remove Universe.coord Component-Core deprecation Deprecated functionality to give advance warning for API changes. proposal
#4963 opened Mar 12, 2025 by orbeckst
3
XTC Writer distorts coordinates due to missing index Format-Gromacs more information needed Please reply to requests for information or the issue will be closed.
#4928 opened Feb 24, 2025 by pipitoludovico
1
NoJump transformation fails in a non intuitive way when applied outside of the first frame Component-Transformations On-the-fly transformations usability
#4915 opened Feb 14, 2025 by IAlibay
1
2
Update secondary structure assignment in DSSP after an upstream fix Component-Analysis defect upstream issue in a dependency
#4913 opened Feb 12, 2025 by marinegor
2
mda.fetch_pdb() to generate Universe from Protein Databank structures Component-Readers enhancement Format-PDB topology-building
#4907 opened Feb 8, 2025 by orbeckst
1
8
Bugs for distance calculation functions Component-lib PBC
#4906 opened Feb 6, 2025 by zbaibg
2
Preserve Full Trajectory Information in Parallel Analysis Component-Analysis parallelization
#4891 opened Jan 13, 2025 by yuxuanzhuang
1
@yuxuanzhuang
5
issue with large dcd seeking Component-Readers defect Format-DCD
#4879 opened Jan 2, 2025 by qlearn-code
22
Feature proposal: Adding a ResidenceTime Analysis Routine Component-Analysis enhancement MDAKit suitable for MDAKit proposal
#4868 opened Dec 27, 2024 by mattiafelice-palermo
5
Support for numpy.dtypes.StringDType in AtomGroup containers? Component-Core enhancement
#4847 opened Dec 20, 2024 by jauy123
1
feat: add RelPropertySelection to select atoms based on positions relative to a given selection Component-Selections decision needed requires input from developers before moving further enhancement
#4838 opened Dec 16, 2024 by ChiahsinChu
1
5
Make the AnalysisBase compatible with live simulation streams Component-Analysis decision needed requires input from developers before moving further enhancement streaming
#4828 opened Dec 11, 2024 by ljwoods2
9
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