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1. Download Download Public

2. gatk-protected gatk-protected Public

   Forked from broadgsa/gatk-protected

   GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only

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3. TS TS Public

   Forked from alecw/TS

   Torrent Suite

   Python

4. GATK-QScripts GATK-QScripts Public

   Forked from UMCUGenetics/GATK-QScripts

   GATK QScripts used in our illumina variant calling pipeline.

   Scala

5. bamdst bamdst Public

   Forked from shiquan/bamdst

   a lightweight bam file depth statistical tool

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6. bcbio.variation bcbio.variation Public

   Forked from chapmanb/bcbio.variation

   Toolkit to analyze genomic variation data, built on the GATK with Clojure

   Clojure