e11 analysis

Note. This project is no longer being developed and has been archived.

Python 3 tools for analyzing experimental data stored in hdf5 files.

Install

Requirements:

h5py, scipy, numpy, pandas, pyarrow, tqdm, pytest

Optional:

xarray

Install all dependencies then install e11_analysis using setuptools,

git clone https://github.com/ad3ller/e11_analysis
cd ./e11_analysis
python setup.py install

And run tests,

pytest

The package can now be imported into python as e11.

Quick Start

>>> from e11 import H5Scan

>>> # data file
>>> fil = ".\\example_data\\microwave_scan.h5"
>>> scan = H5Scan(fil)

>>> # list datasets
>>> print(scan.datasets())

['analysis', 'osc_0']

>>> # array data
>>> arr = scan.array('osc_0')
>>> print(arr.shape)

(140, 1000)

>>> # DataFrame data
>>> df = scan.df('analysis')
>>> print(df[['var', 'w0', 'f']].head())

                 var          w0         f
measurement
0            32.0500  777.950119 -0.006381
1            32.0505  777.950119 -0.006506
2            32.0510  777.950120 -0.006417
3            32.0515  777.950119 -0.006428
4            32.0520  777.950119 -0.006499

See example notebooks.