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Releases: allytrope/ped

v0.10.0

29 Jul 04:50
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The -n flag now takes the intersection of the relatives of the probands; that is, only those that all probands share. Without -n, the union is taken, which was the previous functionality.

v0.9.2

16 Jul 04:27
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Fix different bug created in v0.9.1 that caused an UnpackDefect error with -d <int>.

v0.9.1

15 Jul 17:03
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  • Fix where individuals without any relatives were not appearing when using -Ot
  • Minor corrections to README.md

v0.9.0

12 Jul 19:21
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  • Use -m to keep mates
  • Can filter by both -r and -d at the same time
  • Update README.md

v0.8.0

05 Jul 15:45
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  • -a now keeps only probands + ancestors
  • -b now keeps only probands + descendants
  • Better error messages for invalid option combinations
  • Group options together for quicker overview in README.md
  • Add new example to README.md
  • Reformat headers in README.md

v0.7.0

08 Jun 17:28
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  • Can now output as matrix of coefficients of relationship using -Om
  • Can also output coefficients of relationship pairwise (that is, two individuals and their coefficient per line) with -Ow
  • Fix where the coefficient of relationship of an individual to itself was 2.0 instead of 1.0

v0.6.0

10 May 06:18
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  • Individuals can now be filtered using coefficient of relationship with the -r option
  • Update README.md with example values for -d and -r

v0.5.0

26 Apr 04:16
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  • Pedigree file can be passed through stdin
  • Probands can be specified as a file with the -P option
  • Docopt now checks that -d is included whenever -p or -P are present and vice versa
  • Update README.md

v0.4.0

17 Apr 05:17
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  • Can specify multiple probands as a comma-delimited string
  • Probands are now specified with -p option
  • Flag -f to ignore error if a proband is not in pedigree
  • Remove subcommand relatives. Its previous behavior is now the default
  • More error messages for incorrect combinations of options

v0.3.0

12 Apr 02:10
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  • Can now output to PLINK-style format. This is specified with -Op.