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1. PCAtest PCAtest Public

   R package PCAtest for evaluating the statistical significance of PCA analysis, selecting number of significant PC axes, and testing the contributions of the variables to those PCs.

   R 21 3

2. sGMYC sGMYC Public

   R package to run GMYC analysis with subsamples of sequences obtained from within the species delimited using all sequences.

   R 1

3. P2C2M2 P2C2M2 Public

   R package to test the multi-species coalescent model using trees estimated with starBEAST2 and to estimate false-positive error rates based on samples from the posterior predictive distributions

   R

4. areaPD areaPD Public

   The package areaPD contains functions for calculating phylogenetic diversity (PD) for a set of geographic areas, calculating complementarity PD given a selected area, and drawing a Venn's diagram o…

   R

5. simscripts_P2C2M2 simscripts_P2C2M2 Public

   Scripts used for simulating sequence data from species trees and networks to evaluate P2C2M2 performance

   Julia