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@atgenomix

ATGENOMIX

Cloud-native biomedical informatics platform

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  1. deepvariant-on-spark deepvariant-on-spark Public

    DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.

    Shell 13 5

  2. graphseq graphseq Public

    String Graph Construction on Spark

    Python 3

  3. deepvariant deepvariant Public

    Forked from google/deepvariant

    DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

    Python 1 1

  4. hail hail Public

    Forked from hail-is/hail

    Scalable genomic data analysis.

    Scala 1

  5. connectedreads connectedreads Public

    a machine-learning optimized long-range genome analysis workflow for next-generation sequencing

    Scala 1

  6. seqslab-plugin-api seqslab-plugin-api Public

    Java 1

Repositories

Showing 10 of 23 repositories
  • atgwas Public
    R 0 0 0 0 Updated Apr 23, 2025
  • oncoexpr Public
    R 0 1 8 0 Updated Apr 21, 2025
  • hail Public Forked from hail-is/hail

    Scalable genomic data analysis.

    Scala 1 MIT 253 0 0 Updated Apr 17, 2025
  • Java 1 0 0 0 Updated Apr 17, 2025
  • seqslab-api-reference Public

    SeqsLab REST API YAML files for docs.atgenomix.com

    0 0 0 0 Updated Apr 1, 2025
  • shinyapps Public

    Shiny apps on Atgenomix SeqsLab

    R 0 Apache-2.0 0 0 0 Updated Jan 22, 2025
  • kneaddata Public Forked from biobakery/kneaddata

    Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.

    Python 0 31 0 0 Updated Dec 24, 2024
  • seqslab-operators Public

    Atgenomix Operators are SeqsLab platform plugins and open-source Cromwell extensions that streamline heterogeneous data integration and transformation, and scale complex workflow tasks, using distributed computing clusters and GPU accelerators.

    Scala 0 Apache-2.0 0 1 1 Updated Oct 18, 2024
  • sparklyr Public Forked from sparklyr/sparklyr

    R interface for Apache Spark

    R 0 Apache-2.0 316 0 0 Updated Sep 22, 2024
  • support Public
    0 0 0 0 Updated Sep 22, 2024

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