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@broadinstitute

Broad Institute

Broad Institute of MIT and Harvard

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  1. gatk gatk Public

    Official code repository for GATK versions 4 and up

    Java 1.8k 602

  2. picard picard Public

    A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    Java 998 372

  3. cromwell cromwell Public

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Scala 1k 359

Repositories

Showing 10 of 1349 repositories
  • SpliceAI-lookup Public

    Website for checking SpliceAI and Pangolin scores:

    broadinstitute/SpliceAI-lookup’s past year of commit activity
    HTML 21 MIT 7 2 0 Updated Mar 13, 2025
  • depmap-portal Public

    Code for the DepMap portal at depmap.org

    broadinstitute/depmap-portal’s past year of commit activity
    Python 7 BSD-2-Clause 1 0 13 Updated Mar 13, 2025
  • starrynight Public

    Library and tools to process cell painting images

    broadinstitute/starrynight’s past year of commit activity
    Python 2 BSD-3-Clause 0 19 3 Updated Mar 13, 2025
  • sherlock Public

    DSP DevOps's deployment source-of-truth service

    broadinstitute/sherlock’s past year of commit activity
    Go 1 BSD-3-Clause 0 0 11 Updated Mar 13, 2025
  • gnomad-constraint Public
    broadinstitute/gnomad-constraint’s past year of commit activity
    Python 5 BSD-3-Clause 0 0 0 Updated Mar 13, 2025
  • BEClust3D Public
    broadinstitute/BEClust3D’s past year of commit activity
    Jupyter Notebook 0 0 0 8 Updated Mar 12, 2025
  • firecloud-orchestration Public
    broadinstitute/firecloud-orchestration’s past year of commit activity
    Scala 31 BSD-3-Clause 4 0 6 Updated Mar 12, 2025
  • rawls Public

    Rawls service for DSDE

    broadinstitute/rawls’s past year of commit activity
    Scala 26 BSD-3-Clause 4 0 12 Updated Mar 12, 2025
  • jati Public

    DSL support library for Rust

    broadinstitute/jati’s past year of commit activity
    Rust 1 BSD-3-Clause 0 0 0 Updated Mar 12, 2025
  • gnomad-browser Public

    Explore gnomAD datasets on the web

    broadinstitute/gnomad-browser’s past year of commit activity
    TypeScript 81 MIT 47 163 (3 issues need help) 12 Updated Mar 13, 2025
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