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@centuri-engineering

CENTURI Multi-Engineering Platform

Common room for CENTURI affiliated developers

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  1. differential-expression_workflow differential-expression_workflow Public

    This workflow performs an RNA-seq analysis from the sequencing output data to the differential expression analyses.

    R 1

  2. omero-utils omero-utils Public

    python and jupyter scripts, widgets and utilities for interacting with omero

    Jupyter Notebook 2

  3. scRNAseq_analysis_workflow scRNAseq_analysis_workflow Public

    Single-Cell RNA-seq analysis workflow for 10x Genomics data

    Python 2

  4. Microbiome-Analysis-Workflow Microbiome-Analysis-Workflow Public

    Forked from metavannier/Microbiome-Analysis-Workflow

    This workflow performs a metabarcoding analysis from the reads sequencing to the production of a report presenting the graphical results.

    Python

Repositories

Showing 10 of 38 repositories
  • multicelldetection Public Forked from ledvic/multicelldetection

    Multi-cell Detection for Confocal Images of the embryo of Xenopus laevis tadpoles

    centuri-engineering/multicelldetection’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Mar 27, 2025
  • AFM-leveling Public Forked from ledvic/AFM-leveling

    Python scripts for AFM data processing and analysis

    centuri-engineering/AFM-leveling’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Mar 26, 2025
  • napari-vos-sam2 Public Forked from ledvic/napari-vos-sam2

    Napari plugin for Video Object Segmentation adapted for cell aggregates aspiration experiments

    centuri-engineering/napari-vos-sam2’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Mar 26, 2025
  • napari-zplane-depth-colorizer Public Forked from maihanhoang/napari-zplane-depth-colorizer

    napari plugin to facilitate annotations

    centuri-engineering/napari-zplane-depth-colorizer’s past year of commit activity
    Python 0 BSD-3-Clause 1 0 0 Updated Jan 29, 2025
  • Galaxy_workflow_bulk_RNA-seq- Public

    Galaxy tools needed to run Thomas Vannier's differential expression workflow on Galaxy

    centuri-engineering/Galaxy_workflow_bulk_RNA-seq-’s past year of commit activity
    R 0 0 0 0 Updated Dec 18, 2024
  • Software_Python_OpenLabFram Public Forked from AudreyComte/New_version_OpenLabFram
    centuri-engineering/Software_Python_OpenLabFram’s past year of commit activity
    Python 0 1 0 0 Updated Sep 17, 2024
  • ProtruDe Public

    Repository of ImageJ macros and plugins for detecting protrusion in the videos of SARS-CoV-2 spike protein, captured by high-speed atomic force microscope.

    centuri-engineering/ProtruDe’s past year of commit activity
    Java 1 GPL-3.0 0 0 0 Updated Mar 6, 2024
  • differential-expression_workflow Public

    This workflow performs an RNA-seq analysis from the sequencing output data to the differential expression analyses.

    centuri-engineering/differential-expression_workflow’s past year of commit activity
    R 0 BSD-3-Clause 1 0 0 Updated Nov 16, 2023
  • cataloger Public

    Filling form for microscopy image annotations (on the biology side of things)

    centuri-engineering/cataloger’s past year of commit activity
    Python 2 MIT 0 7 1 Updated Jun 9, 2023
  • clicket Public archive

    Adaptation of https://github.com/evereux/flicket app to suit our needs

    centuri-engineering/clicket’s past year of commit activity
    Python 0 MIT 0 3 2 Updated May 1, 2023
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