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@claassenlab

Claassen Lab

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  1. S3-CIMA Public

    Supervised Spatial Single-Cell Image Analysis

    Jupyter Notebook 2 1

  2. DICSIT Public

    Forked from janschleicher/DICSIT

    Jupyter Notebook

  3. CellCnn Public

    Forked from eiriniar/CellCnn

    Representation Learning for detection of phenotype-associated cell subsets

    Jupyter Notebook

  4. cytopath Public

    Forked from aron0093/cytopath

    Simulation based inference of differentiation trajectories from RNA velocity fields.

    Python

  5. pyPsupertime Public

    Scalable reimplementation of psupertime in python

    Python 1

  6. MORESCA Public

    This repository provides a template and some resources on standardized scRNA-seq analysis using Python.

    Python

Repositories

Showing 10 of 16 repositories
  • MORESCA Public

    This repository provides a template and some resources on standardized scRNA-seq analysis using Python.

    Python 0 AGPL-3.0 0 9 0 Updated Apr 25, 2025
  • cellpose Public Forked from MouseLand/cellpose

    a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

    Jupyter Notebook 4 BSD-3-Clause 451 2 0 Updated Oct 5, 2024
  • velocity_package Public template Forked from HaghverdiLab/velocity_package
    Python 0 AGPL-3.0 2 0 0 Updated Aug 29, 2024
  • Tex_repro Public

    Jupyter notebooks for reproducing the results of Gupta et al. 2024

    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Aug 16, 2024
  • pyPsupertime Public

    Scalable reimplementation of psupertime in python

    Python 1 MIT 0 1 0 Updated Sep 29, 2023
  • cytopath Public Forked from aron0093/cytopath

    Simulation based inference of differentiation trajectories from RNA velocity fields.

    Python 0 BSD-3-Clause 4 0 0 Updated Aug 22, 2023
  • S3-CIMA Public

    Supervised Spatial Single-Cell Image Analysis

    Jupyter Notebook 2 1 1 0 Updated Jul 28, 2023
  • Teamproject-2023 Public

    Implementation of RNA velocity for estimation of single cell transcriptomic dynamics.

    Python 0 0 25 0 Updated Jul 25, 2023
  • DICSIT Public Forked from janschleicher/DICSIT
    Jupyter Notebook 0 GPL-3.0 2 0 0 Updated Dec 23, 2022
  • MoESimVAE Public Forked from andkopf/MoESimVAE

    Mixture-of-Experts Variational Autoencoder for Clustering and Generating from Similarity-Based Representations on Single Cell Data

    Python 0 Apache-2.0 3 0 0 Updated Apr 22, 2021
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