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More wrangler utilities and options to create MWFRs #40

Merged
merged 4 commits into from
Jan 22, 2025
Merged

More wrangler utilities and options to create MWFRs #40

merged 4 commits into from
Jan 22, 2025

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alexander-veit
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This PR

  • adds possibility to overwrite the exsting QCs when running a standalone QC workflow.
  • in QC workflows, it is now possible to specify multiple files or filesets at once. MetaworkflowRuns are created for each file or fileset
  • Added a custom_qc function. It does nothing right now, but it can be used when custom MWFs are created by bioinformatics and need to be run
  • Added function to reset a list of MetaWorkflowRuns
  • Added function to merge QC items.
  • Updated RNA-specific input to Gencode 47

sarahgonicholson
sarahgonicholson approved these changes Jan 21, 2025
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Looks good to me!

@alexander-veit alexander-veit merged commit 31a5331 into master Jan 22, 2025
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@alexander-veit alexander-veit deleted the more_options branch January 22, 2025 14:19
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@sarahgonicholson sarahgonicholson sarahgonicholson approved these changes

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@alexander-veit @sarahgonicholson