A program designed to convert Medusa (https://sites.google.com/site/medusa3visualization/) network files, as output by the STRING (http://string.embl.de/) program to Simple Interaction Format (SIF) supported by Cytoscape (http://cytoscape.org/).
java -jar medusa2sif.jar [-i] in.medusa [-o] out.sif
-i/--input - path to input Medusa file -o/--output - path to output SIF file -t/--type - interaction type for edges
Arguments may be specified using the command switches or positionally, but not a mix.
Copyright © 2013 David Nusinow david@gravitypulls.net
Distributed under the GNU General Public License (GPL) version 3.0.