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@eastgenomics

East Genomics

Bringing together genomic medicine across the East Midlands and East of England

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  1. eggd_tso500 eggd_tso500 Public

    Runs the Illumina TSO500 local analysis app.

    Shell 5 2

  2. eggd_mosdepth eggd_mosdepth Public

    mosdepth (DNAnexus Platform App)

    Shell 4

  3. athena athena Public

    Provides HTML reports with detailed coverage analysis for clinical NGS data.

    HTML 4 2

  4. Ploutos Ploutos Public archive

    Code for the DNAnexus billing project.

    Python 4

  5. eggd_staraligner eggd_staraligner Public

    Shell 4

  6. eggd_generate_variant_workbook eggd_generate_variant_workbook Public

    DNAnexus app for generating xlsx variant workbooks

    Python 3

Repositories

Showing 10 of 249 repositories
  • uranus_nf_core_mini Public

    A mini uranus mostly nf-core pipeline that incorporates mosdepth, cggpindel (not nf-core) and sentieon bwamem

    eastgenomics/uranus_nf_core_mini’s past year of commit activity
    Nextflow 0 0 0 0 Updated Apr 4, 2025
  • eggd_dias_batch Public

    DNAnexus app to launch reports workflows for Dias pipeline

    eastgenomics/eggd_dias_batch’s past year of commit activity
    Python 1 1 7 0 Updated Apr 3, 2025
  • eggd_uranus_main_workflow Public

    DNAnexus Uranus workflow to support the Haem-Onc myeloid project

    eastgenomics/eggd_uranus_main_workflow’s past year of commit activity
    2 0 2 0 Updated Apr 3, 2025
  • eggd_conductor_configs Public

    Repository of eggd_conductor app and assay config files

    eastgenomics/eggd_conductor_configs’s past year of commit activity
    0 0 4 0 Updated Apr 3, 2025
  • medicover_aws Public

    Code to parse Mediover DSS case JSONs for importing to INCA database

    eastgenomics/medicover_aws’s past year of commit activity
    0 MIT 0 0 1 Updated Apr 3, 2025
  • eggd_dias_single_workflow Public

    Workflow definition for Dias single

    eastgenomics/eggd_dias_single_workflow’s past year of commit activity
    2 0 0 1 Updated Apr 3, 2025
  • eggd_generate_variant_workbook Public

    DNAnexus app for generating xlsx variant workbooks

    eastgenomics/eggd_generate_variant_workbook’s past year of commit activity
    Python 3 0 9 0 Updated Apr 3, 2025
  • eggd_generate_rd_wgs_workbook Public

    DNAnexus app to generate Excel workbook from GEL RD WGS output

    eastgenomics/eggd_generate_rd_wgs_workbook’s past year of commit activity
    Python 0 MIT 0 2 1 Updated Apr 2, 2025
  • athena Public

    Provides HTML reports with detailed coverage analysis for clinical NGS data.

    eastgenomics/athena’s past year of commit activity
    HTML 4 MIT 2 13 0 Updated Apr 2, 2025
  • eggd_generate_wgs_solid_cancer_workbook Public

    DNAnexus app to generate Excel workbook from GEL Solid Cancer WGS output

    eastgenomics/eggd_generate_wgs_solid_cancer_workbook’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Apr 2, 2025
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