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@evolbioinfo

Evolutionary Bioinformatics

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  1. gotree Public

    Gotree is a set of command line tools and an API to manipulate phylogenetic trees. It is implemented in Go language.

    Go 129 16

  2. goalign Public

    Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.

    Go 84 8

  3. booster Public

    C 28 2

  4. pastml Public

    Ancestral character reconstruction and visualisation for rooted phylogenetic trees

    Python 32 6

  5. dockerfiles Public

    Dockerfiles for tools commonly used for phylogenetic analyses

    Dockerfile 9 9

  6. phylodeep Public

    PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.

    Python 23 6

Repositories

Showing 10 of 30 repositories
  • treesimulator Public
    Python 2 GPL-3.0 1 0 0 Updated Mar 20, 2025
  • dockerfiles Public

    Dockerfiles for tools commonly used for phylogenetic analyses

    Dockerfile 9 9 1 0 Updated Mar 13, 2025
  • bdct Public

    Birth-death epidemiological parameter estimator accounting for partner notification

    Python 1 GPL-3.0 0 0 0 Updated Mar 10, 2025
  • bdei Public

    Birth-Death Exposed-Infectious (BDEI) model parameter inference from phylogenetic trees

    Python 4 LGPL-2.1 0 0 0 Updated Feb 13, 2025
  • pastml Public

    Ancestral character reconstruction and visualisation for rooted phylogenetic trees

    Python 32 GPL-3.0 6 11 0 Updated Jan 17, 2025
  • phylodeep Public

    PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.

    Python 23 6 3 1 Updated Oct 9, 2024
  • gotree Public

    Gotree is a set of command line tools and an API to manipulate phylogenetic trees. It is implemented in Go language.

    Go 129 GPL-2.0 16 6 0 Updated Sep 26, 2024
  • goalign Public

    Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.

    Go 84 GPL-2.0 8 2 0 Updated Sep 26, 2024
  • bayesian_bootstrap_analyses Public
    Nextflow 2 0 0 0 Updated Sep 20, 2024
  • geo_subsampler Public

    A phylogeny subsampling tool combining geographic proportions and phylogenetic diversity

    Python 0 GPL-3.0 0 0 0 Updated Sep 6, 2024
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