This repo describes the basic pipeline of bulk RNA-seq analysis from using Snakemake, Kallisto for read mapping, gene quantification, QC, PCA, and downstream analysis.
-
Notifications
You must be signed in to change notification settings - Fork 0
fanzhanglab/bulk_RNAseq_pipeline
Folders and files
| Name | Name | Last commit message | Last commit date | |
|---|---|---|---|---|
Repository files navigation
About
Bulk RNA-seq analytical pipeline, including using Snakemake to run main steps such as Kallisto read mapping, QC, Principal Component Analysis (PCA), and other downstream analysis.
Topics
Resources
Stars
Watchers
Forks
Releases
No releases published
Packages 0
No packages published