Teaching material for the "Molecular Phylogenetics" classes of the MSc in Bioinformatics at the University of Bologna. Curated by Giobbe Forni with the contribution of the mighty Jacopo Martelossi and Andrea Luchetti.
- W1_00 - intro to the course + software installation [ slides + practicals ]
- W1_01 - phylogenetics 101 pt. A [ slides + practicals ]
- W1_02 - phylogenetics 101 pt. B [ slides + practicals ]
- W2_03 - orthology infererence and taxon sampling [ slides + practicals ]
- W2_04 - sequence alignement and filtering [ slides + practicals ]
- W2_05 - distance-based versus charcter-based algorythms [ slides ]
- W3_06 - MK models of molecular evolution [ slides + practicals ]
- W3_07 - Maximum Likelihood (ML) [ slides + practicals ]
- W3_08 - Bayesian Inference (BI)[ slides + practicals ]
- W3_09 - half course recap [ practicals ]
- W4_10 - support metrics [ slides + practicals ]
- W4_11 - complex substitution models [ slides + practicals ]
- W4_12 - hypothesis testing [ slides + practicals ]
- W5_13 - discordance, ILS & the coalescent [ slides + practicals ]
- W5_14 - stochastic and systematic bias [ slides + practicals ]
- W5_15 - divergence times analyses [ slides + practicals ]
- W6_16 - modelling trait evolution on phylogenies: continuous traits [ slides + practicals ]
- W6_17 - modelling trait evolution on phylogenies: discrete traits [ slides + practicals ]
- W6_18 - inferring selection [ slides + practicals ]
- W7_19 - milestone project pt. A [ project ]
- W7_20 - milestone project pt. B [ project ]
For any inquiry write to: giobbe.forni2@unibo.it