gkarthik / zika-isnv Public

forked from nickloman/zika-isnv

Zika iSNV detection on nanopore

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Name		Name	Last commit message	Last commit date
Latest commit History 23 Commits
refs		refs
scripts		scripts
.gitignore		.gitignore
BC01.freqs.txt		BC01.freqs.txt
BC01.trimmed.sorted.bam		BC01.trimmed.sorted.bam
BC01.trimmed.sorted.bam.bai		BC01.trimmed.sorted.bam.bai
BC01.variants.0.03.txt		BC01.variants.0.03.txt
BC01.variants.freqs.txt		BC01.variants.freqs.txt
BC02.freqs.txt		BC02.freqs.txt
BC02.trimmed.sorted.bam		BC02.trimmed.sorted.bam
BC02.trimmed.sorted.bam.bai		BC02.trimmed.sorted.bam.bai
BC02.variants.0.03.txt		BC02.variants.0.03.txt
BC02.variants.freqs.txt		BC02.variants.freqs.txt
BC03.freqs.txt		BC03.freqs.txt
BC03.trimmed.sorted.bam		BC03.trimmed.sorted.bam
BC03.trimmed.sorted.bam.bai		BC03.trimmed.sorted.bam.bai
BC03.variants.0.03.txt		BC03.variants.0.03.txt
BC03.variants.freqs.txt		BC03.variants.freqs.txt
LICENSE		LICENSE
README		README
README.md		README.md
analysis.Rmd		analysis.Rmd
analysis.html		analysis.html
analysis.nb.html		analysis.nb.html
analysis.pdf		analysis.pdf
expectedpositions.txt		expectedpositions.txt
illumina_variants.tsv		illumina_variants.tsv
minion_glm_classifier_snps.tsv		minion_glm_classifier_snps.tsv
minion_variants.tsv		minion_variants.tsv
minion_variants_3pc_0.7strandaf.tsv		minion_variants_3pc_0.7strandaf.tsv
minion_variants_3pc_all.tsv		minion_variants_3pc_all.tsv
minion_wt_frequencies.tsv		minion_wt_frequencies.tsv
process_data.sh		process_data.sh
roc_curve.pdf		roc_curve.pdf
setup_environment.sh		setup_environment.sh