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ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function prediction
Installs Ruby, JRuby, TruffleRuby, or mruby
A script to check fungus names for the most up to date nomenclature according to Species Fungorum 🍄
A tool to filter BUSCO output into single-copy gene files for phylogenomics
Efficient implementation of the MAD method for inferring the location of the root in a large phylogeny.
Files for EukRef workshop in Barcelona - July 2023
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.
A genome completeness evaluation tool based on miniprot
Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size
Validate and edit small eukaryotic genome assemblies
asl / BandageNG
Forked from rrwick/Bandagea Bioinformatics Application for Navigating De novo Assembly Graphs Easily
Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler
🎄Unofficial control for Twinkly - Smart Decoration LED lights.
Structural and functional annotation of eukaryotic metagenome-assembled genomes
Interim data for the Darwin Tree of Life Project
Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
Script to collect sequence files from multiple NCBI WGS projects and process them (LEGACY SOFTWARE)
TaxOnTree is a bioinformatic tool that automatically colors a phylogenetic tree according to the taxonomic information provided by NCBI taxonomy.
A simple command-line tool to download data from Joint Genome Institute databases