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GBWT v1.4

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@jltsiren jltsiren released this 08 Mar 06:27
  • GBWT is now silent by default; adjust with Verbosity::set() if necessary.
  • GBWTBuilder (and related tools) will automatically increase buffer size if a sequence is too large for the buffer.
  • Metadata improvements:
    • FullPathName: A standalone version of PathName that stores sample/contig names/ids as strings without requiring Metadata.
    • Metadata::findFragment(): Returns the path identifier of the haplotype fragment possibly covering the (sample, contig, haplotype, offset) represented by a path name.
    • FragmentMap: A helper structure for working with fragmented haplotypes.
  • New functionality:
    • FastLocate::decompressSA() and FastLocate::decompressDA() for decompressing the part of the suffix array / document array corresponding to a node.