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🧠 Knoblich Lab

Everything that makes us human is contained within 1.4kg of yellowish tissue that we call the human brain. In the Knoblich lab we are fascinated by this enormously complex structure and study its formation during embryonic development. Our unique combination of model organisms allows us to study the mechanism of human brain development in a powerful way: We take basic principles from analysis of the simple brain of Drosophila, and transfer them to a human model using three-dimensional cerebral organoids. Our ability to recreate the process of human neurodevelopment in the lab using the organoid system allows us to investigate what goes wrong when patients develop neurodevelopmental disorders like microcephaly, or severe neuro-psychiatric disorders like epilepsy or autism.

Codes for published projects are provided via the repositories.

A full publication listing can be found here.

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  1. ASD_CHOOSE ASD_CHOOSE Public

    Forked from quadbio/ASD_CHOOSE

    Scripts to reproduce the figures from the CHOOSE study

    R

  2. gruffi gruffi Public

    Forked from jn-goe/gruffi

    Granular Functional Filtering (Gruffi) to isolate stressed cells

    R

  3. TSC_Science2021 TSC_Science2021 Public

    Forked from OliverEichmueller/TSC_Science2021

    Reference for scripts used in the manuscript on tuberous sclerosis complex (TSC) published in Science 2021

    R

  4. miscos_org_ephys miscos_org_ephys Public

    Forked from bardylab/miscos_org_ephys

    Electrophysiology analysis in ventral midbrain-striatal-cortical organoids (MISCOs) pre- and post- optogenetic stimulation.

    Jupyter Notebook 1

Repositories

Showing 6 of 6 repositories
  • .github Public
    knoblichlab/.github’s past year of commit activity
    0 0 0 0 Updated Nov 7, 2023
  • miscos_org_ephys Public Forked from bardylab/miscos_org_ephys

    Electrophysiology analysis in ventral midbrain-striatal-cortical organoids (MISCOs) pre- and post- optogenetic stimulation.

    knoblichlab/miscos_org_ephys’s past year of commit activity
    Jupyter Notebook 1 GPL-2.0 3 0 0 Updated Nov 1, 2023
  • gruffi Public Forked from jn-goe/gruffi

    Granular Functional Filtering (Gruffi) to isolate stressed cells

    knoblichlab/gruffi’s past year of commit activity
    R 0 GPL-3.0 6 0 0 Updated Sep 26, 2023
  • Limited.Stress.in.Brain.organoids Public Forked from vertesy/Limited.Stress.in.Brain.organoids

    Analysis for Vertesy et al., "Gruffi removes stressed cells from brain organoid datasets"

    knoblichlab/Limited.Stress.in.Brain.organoids’s past year of commit activity
    R 0 GPL-3.0 2 0 0 Updated May 23, 2022
  • ASD_CHOOSE Public Forked from quadbio/ASD_CHOOSE

    Scripts to reproduce the figures from the CHOOSE study

    knoblichlab/ASD_CHOOSE’s past year of commit activity
    R 0 1 0 0 Updated May 16, 2022
  • TSC_Science2021 Public Forked from OliverEichmueller/TSC_Science2021

    Reference for scripts used in the manuscript on tuberous sclerosis complex (TSC) published in Science 2021

    knoblichlab/TSC_Science2021’s past year of commit activity
    R 0 MIT 1 0 0 Updated Nov 30, 2021

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