pipemake

pipemake is a lightweight, flexible, and easy-to-use tool for creating and managing Snakemake pipelines. It was designed with three primary goals:

1. Offer a collection of curated, customizable genomic analysis pipelines for researchers seeking to rapidly integrate Snakemake-based workflows into their research.
2. Optimize computational efficiency and reproducibility by fully operating in the Snakemake ecosystem.
3. Streamline development by creating a flexible platform with swappable pipelines that easily reuse previously written Snakemake code.

Getting pipemake

mamba

mamba create -c conda-forge -c bioconda -c kocherlab -n pipemake pipemake

Issues

1. Check the docs.
2. Search the issues on GitHub or open a new one.

License

Pipemake is licensed under the MIT license. See the LICENSE file for details.