This pipeline takes in raw fastq files, cleans them, runs them through kraken, mash, SeqSero, Serotypfinder, and abricate for antibiotic resistance determination
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logan-fink/sequencing_analysis
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This pipeline takes in raw fastq files, cleans them, runs them through kraken, mash, SeqSero, Serotypfinder, and abricate for antibiotic resistance determination
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